Helper Functions for Bayesian Analyses

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Documentation for package ‘extras’ version 0.10.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

A C D E F I K L N O P Q R S U V X Z

-- A --

as_list	As List
as_list.default	As List
as_list_unnamed	As List
as_list_unnamed.default	As List

-- C --

chk_index	Check Index
chk_indices	Check Indices
chk_pars	Check Parameter Names

-- D --

dbern	Bernoulli Distribution
dev_bern	Bernoulli Deviances
dev_beta_binom	Beta-Binomial Deviances
dev_binom	Binomial Deviances
dev_gamma	Gamma Deviances
dev_gamma_pois	Gamma-Poisson Deviances
dev_gamma_pois_zi	Zero-Inflated Gamma-Poisson Deviances
dev_lnorm	Log-Normal Deviances
dev_neg_binom	Negative Binomial Deviances
dev_norm	Normal Deviances
dev_pois	Poisson Deviances
dev_pois_zi	Zero-Inflated Poisson Deviances
dev_skewlnorm	Skew-Lognormal Deviances
dev_skewnorm	Skew Normal Deviances
dev_student	Student's t Deviances
direction	Direction of a distribution
directional_information	Directional information
dskewlnorm	Skew-Lognormal Distribution
dskewnorm	Skew-Normal Distribution

-- E --

exp10	Exponential Transformation of Base 10
exp2	Exponential Transformation of Base 2

-- F --

fabs	Absolute
fill_all	Fill All Values
fill_all.character	Fill All Values
fill_all.integer	Fill All Values
fill_all.logical	Fill All Values
fill_all.numeric	Fill All Values
fill_na	Fill Missing Values
fill_na.character	Fill Missing Values
fill_na.integer	Fill Missing Values
fill_na.logical	Fill Missing Values
fill_na.numeric	Fill Missing Values

-- I --

ilog	Inverse Log Transformation
ilog10	Inverse Log Base 10 Transformation
ilog2	Inverse Log Base 2 Transformation
ilogit	Inverse Logistic Transformation
invlogit	Inverse Logistic Transformation
inv_logit	Inverse Logistic Transformation
inv_odds	Inverse Odds

-- K --

kurtosis

Kurtosis

-- L --

log10<-	Log Base 10 Transformation
log2<-	Log Base 2 Transformation
log<-	Log Transformation
logit	Logistic Transformation
logit<-	Logistic Transformation
log_lik_bern	Bernoulli Log-Likelihood
log_lik_beta	Beta Log-Likelihood
log_lik_beta_binom	Beta-Binomial Log-Likelihood
log_lik_binom	Binomial Log-Likelihood
log_lik_exp	Exponential Log-Likelihood
log_lik_gamma	Gamma Log-Likelihood
log_lik_gamma_pois	Gamma-Poisson Log-Likelihood
log_lik_gamma_pois_zi	Zero-Inflated Gamma-Poisson Log-Likelihood
log_lik_lnorm	Log-Normal Log-Likelihood
log_lik_neg_binom	Negative Binomial Log-Likelihood
log_lik_norm	Normal Log-Likelihood
log_lik_pois	Poisson Log-Likelihood
log_lik_pois_zi	Zero-Inflated Poisson Log-Likelihood
log_lik_skewlnorm	Skew-Lognormal Log-Likelihood
log_lik_skewnorm	Skew Normal Log-Likelihood
log_lik_student	Student's t Log-Likelihood
log_lik_unif	Uniform Log-Likelihood
log_odds	Log Odds
log_odds<-	Inverse Log Odds Transformation
log_odds_ratio	Log-Odds Ratio
log_odds_ratio2	Log Odds Ratio2
lower	Lower Credible Limit

-- N --

numericise	Numericise (or Numericize)
numericise.array	Numericise (or Numericize)
numericise.data.frame	Numericise (or Numericize)
numericise.Date	Numericise (or Numericize)
numericise.double	Numericise (or Numericize)
numericise.factor	Numericise (or Numericize)
numericise.hms	Numericise (or Numericize)
numericise.integer	Numericise (or Numericize)
numericise.logical	Numericise (or Numericize)
numericise.matrix	Numericise (or Numericize)
numericise.POSIXct	Numericise (or Numericize)
numericize	Numericise (or Numericize)

-- O --

odds	Odds
odds<-	Inverse Odds Transformation
odds_ratio	Odds Ratio
odds_ratio2	Odds Ratio2

-- P --

p2info	Directional information
p2svalue	Surprisal Value
par_pattern	Parameter Pattern
pbern	Bernoulli Distribution
pextreme	Extreme Probability
phi	Phi
pow	Power
probability_direction	Probability of Direction
prob_bern	Bernoulli Cumulative Distribution Function
prob_beta	Beta Cumulative Distribution Function
prob_beta_binom	Beta-Binomial Cumulative Distribution Function
prob_binom	Binomial Cumulative Distribution Function
prob_exp	Exponential Cumulative Distribution Function
prob_gamma	Gamma Cumulative Distribution Function
prob_gamma_pois	Gamma-Poisson Cumulative Distribution Function
prob_gamma_pois_zi	Zero-Inflated Gamma-Poisson Cumulative Distribution Function
prob_lnorm	Log-Normal Cumulative Distribution Function
prob_neg_binom	Negative Binomial Cumulative Distribution Function
prob_norm	Normal Cumulative Distribution Function
prob_pois	Poisson Cumulative Distribution Function
prob_pois_zi	Zero-Inflated Poisson Cumulative Distribution Function
prob_skewlnorm	Skew-Lognormal Cumulative Distribution Function
prob_skewnorm	Skew Normal Cumulative Distribution Function
prob_student	Student's t Cumulative Distribution Function
prob_unif	Uniform Cumulative Distribution Function
proportional_change	Proportional Change
proportional_change2	Proportional Change2
proportional_difference	Proportional Difference
proportional_difference2	Proportional Difference2
pskewlnorm	Skew-Lognormal Distribution
pskewnorm	Skew-Normal Distribution
pvalue	Bayesian P-Value
pzeros	Proportion of Zeros

-- Q --

qbern	Bernoulli Distribution
qskewlnorm	Skew-Lognormal Distribution
qskewnorm	Skew-Normal Distribution
quant_bern	Bernoulli Quantile Function
quant_beta	Beta Quantile Function
quant_binom	Binomial Quantile Function
quant_exp	Exponential Quantile Function
quant_gamma	Gamma Quantile Function
quant_gamma_pois	Gamma-Poisson Quantile Function
quant_gamma_pois_zi	Zero-Inflated Gamma-Poisson Quantile Function
quant_lnorm	Log-Normal Quantile Function
quant_neg_binom	Negative Binomial Quantile Function
quant_norm	Normal Quantile Function
quant_pois	Poisson Quantile Function
quant_pois_zi	Zero-Inflated Poisson Quantile Function
quant_skewlnorm	Skew-Lognormal Quantile Function
quant_skewnorm	Skew Normal Quantile Function
quant_student	Student's t Quantile Function
quant_unif	Uniform Quantile Function

-- R --

ran_bern	Bernoulli Random Samples
ran_beta_binom	Beta-Binomial Random Samples
ran_binom	Binomial Random Samples
ran_gamma	Gamma Random Samples
ran_gamma_pois	Gamma-Poisson Random Samples
ran_gamma_pois_zi	Zero-Inflated Gamma-Poisson Random Samples
ran_lnorm	Log-Normal Random Samples
ran_neg_binom	Negative Binomial Random Samples
ran_norm	Normal Random Samples
ran_pois	Poisson Random Samples
ran_pois_zi	Zero-Inflated Poisson Random Samples
ran_skewlnorm	Skew-Lognormal Random Samples
ran_skewnorm	Skew Normal Random Samples
ran_student	Student's t Random Samples
rbern	Bernoulli Distribution
res_bern	Bernoulli Residuals
res_beta_binom	Beta-Binomial Residuals
res_binom	Binomial Residuals
res_gamma	Gamma Residuals
res_gamma_pois	Gamma-Poisson Residuals
res_gamma_pois_zi	Zero-Inflated Gamma-Poisson Residuals
res_lnorm	Log-Normal Residuals
res_neg_binom	Negative Binomial Residuals
res_norm	Normal Residuals
res_pois	Poisson Residuals
res_pois_zi	Zero-Inflated Poisson Residuals
res_skewlnorm	Skew-Lognormal Residuals
res_skewnorm	Skew Normal Residuals
res_student	Student's t Residuals
rskewlnorm	Skew-Lognormal Distribution
rskewnorm	Skew-Normal Distribution

-- S --

sens_beta	Adjust Beta Distribution Parameters for Sensitivity Analyses
sens_exp	Adjust Exponential Distribution Parameters for Sensitivity Analyses
sens_gamma	Adjust Gamma Distribution Parameters for Sensitivity Analyses
sens_gamma_pois	Adjust Gamma-Poisson Distribution Parameters for Sensitivity Analyses
sens_gamma_pois_zi	Adjust Zero-Inflated Gamma-Poisson Distribution Parameters for Sensitivity Analyses
sens_lnorm	Adjust Log-Normal Distribution Parameters for Sensitivity Analysis
sens_neg_binom	Adjust Negative Binomial Distribution Parameters for Sensitivity Analyses
sens_norm	Adjust Normal Distribution Parameters for Sensitivity Analyses
sens_pois	Adjust Poisson Distribution Parameters for Sensitivity Analyses
sens_skewlnorm	Adjust Skew-Lognormal Distribution Parameters for Sensitivity Analyses
sens_skewnorm	Adjust Skew Normal Distribution Parameters for Sensitivity Analyses
sens_student	Adjust Student's t Distribution Parameters for Sensitivity Analyses
sextreme	Extreme Surprisal
skewness	Skewness
step	Step
svalue	Surprisal Value

-- U --

upper

Upper Credible Limit

-- V --

variance	Variance
vld_index	Check Index
vld_indices	Check Indices
vld_pars	Check Parameter Names

-- X --

xtr_ci	Credible Intervals
xtr_ci_eti	Equal-Tailed Interval
xtr_ci_hdi	Highest Density Interval
xtr_mean	Mean
xtr_median	Median
xtr_rope	Region of Practical Equivalence
xtr_sd	Standard Deviation

-- Z --

zeros	Zeros
zscore	Z-Score