Download, Parse, and Analyze NHANES Data with Mortality Linkage

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Documentation for package ‘nhanesR’ version 0.1.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

nhanes_cache_dir	Get or set the nhanesR local cache directory
nhanes_cycles	List available NHANES cycles
nhanes_download	Download and cache NHANES XPT data files
nhanes_download_analyte	Download NHANES files for an analyte using the CDC variable catalog
nhanes_followup_summary	Summarize mortality follow-up by cycle
nhanes_harmonize	Harmonize variable names across NHANES cycles and stack into one data frame
nhanes_lmf_cycles	List NHANES cycles with a public-use LMF
nhanes_manifest	List available files for a NHANES cycle and component
nhanes_merge	Merge NHANES component data frames by SEQN
nhanes_mortality_download	Download NHANES Public-Use Linked Mortality Files
nhanes_mortality_link	Link mortality data onto an NHANES analytic dataset
nhanes_mortality_parse	Parse NHANES Linked Mortality Files into data frames
nhanes_search_variables	Search NHANES variables by keyword
nhanes_stack	Stack NHANES data across multiple cycles
nhanes_survival_prep	Prepare an NHANES-LMF dataset for survival analysis
nhanes_ucod_labels	Lookup table for UCOD_LEADING cause-of-death codes
nhanes_variable_map	Build a per-cycle variable map for an analyte
NH_describe	NHANES-annotated variable descriptions
NH_label	Attach CDC variable descriptions as Hmisc-style labels
svycph_fuse	Fuse svycoxph and cph objects for rms ecosystem compatibility
svycph_set_basehaz	Substitute weighted baseline hazard into a fused cph object
weighted_basehaz	Compute survey-weighted cumulative baseline hazard with variance