# Functions for Analyzing and Plotting Estuary Monitoring Data

## Documentation for package ‘SWMPrExtension’ version 2.2.5.1

- DESCRIPTION file.
- Package NEWS.

## Help Pages

annual_range | Annual Range Timeseries
annual_range.swmpr | Annual Range Timeseries
assign_season | Assign seasons to SWMP sampling data
base_map | Create background map
cbm_spatial | Spatial Data from Chesapeake Bay - Maryland
counties_4269 | US County Map
create_sk_flextable_list | Create a List of Flextable Objects
create_sk_national_ft_reserves | Create a Flextable Object of Reserve Names
create_sk_national_ft_results | Create a Flextable Object of Seasonal Kendall Results
elknmnut | Nutrient Data from Elkhorn Slough - North Marsh Station
elksmwq | Water Quality Data from Elkhorn Slough - South Marsh Station
elk_spatial | Spatial Data from Elkhorn Slough
ft_col_names | Convert Parameter Abbreviations
generate_results_table | Filter Reformatted Seasonal Kendall Results
generate_station_table | Filter Reformatted Seasonal Kendall Results
geographic_unique_stations | Return a vector of geographically unique NERR Stations
get_reserve | Identify NERRS reserve from metadata
get_shp_name | Identify shapefile for NERRS reserve
get_sites | Identify NERRS reserve stations from metadata
get_site_code | Return NERRS reserve site code based on data in the data file
get_site_coordinates | Identify NERRS sampling locations from metadata
historical_daily_range | Historical Daily Range Timeseries
historical_daily_range.swmpr | Historical Daily Range Timeseries
historical_range | Historical Monthly/Seasonal Range Timeseries
historical_range.swmpr | Historical Monthly/Seasonal Range Timeseries
import_local_nut | Import local CDMO data
lm_p_labs | P-Value labels for Plotting
load_shp_file | Load and format shapefile for reserve level map
national_sk_map | Reserve National Map with Seasonal Kendall Results
raw_boxplot | Boxplots of raw data by user-defined season for a target year
raw_boxplot.swmpr | Boxplots of raw data by user-defined season for a target year
remove_inf_and_nan | Replace Inf/-Inf/NaN values
reserve_locs | NERRS Sampling Location Data Frame
res_custom_map | Local Reserve Map for Custom Stations
res_custom_sk_map | Local Reserve Map With Seasonal Kendall Results for Custom Stations
res_local_map | Local Reserve Map
res_national_map | Reserve National Map
res_sk_map | Local Reserve Map With Seasonal Kendall Results
sampling_stations | Detailed NERRS site data
sampling_stations_backup | A Backup of Detailed NERRS site data
seasonal_barplot | Cumulative Bar Plot
seasonal_barplot.swmpr | Cumulative Bar Plot
seasonal_boxplot | Seasonal boxplots
seasonal_boxplot.swmpr | Seasonal boxplots
seasonal_dot | Seasonal Dot Plot
seasonal_dot.swmpr | Seasonal Dot Plot
set_date_breaks | Set reasonable date breaks
set_date_breaks_minor | Select reasonable minor breaks for 'scale_x_datetime'
set_date_break_labs | Set reasonable date breaks labels
sk_seasonal | Seasonal Kendall Analysis for Seasonal Data
sk_seasonal.swmpr | Seasonal Kendall Analysis for Seasonal Data
sk_tidy | Tidy Seasonal Kendall Results
std_param_check | Standard Parameter Check
summarise_handoff_files | Summarise Hand-off Files from Reserve Level Reports
threshold_criteria_plot | Water Quality Threshold Plot For Parameters With Criteria
threshold_criteria_plot.swmpr | Water Quality Threshold Plot For Parameters With Criteria
threshold_identification | Tabulate Threshold Exceedances
threshold_identification.swmpr | Tabulate Threshold Exceedances
threshold_percentile_plot | Threshold Percentile Plot
threshold_percentile_plot.swmpr | Threshold Percentile Plot
threshold_summary | Summary Plots for Threshold Identification
threshold_summary.swmpr | Summary Plots for Threshold Identification
title_labeler | Generate Plot Title Based on NERR Site ID
update_sampling_stations | Update reserve sampling stations
us_4269 | US State Map
y_count_labeler | Generate y-axis Label Based on SWMP Parameter Abbreviation
y_labeler | Generate y-axis Label Based on SWMP Parameter Abbreviation