# Interface to 'dgpsi' for Deep and Linked Gaussian Process Emulations

## Documentation for package ‘dgpsi’ version 2.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

alm | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using ALM
alm.bundle | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using ALM
alm.dgp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using ALM
alm.gp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using ALM
combine | Combine layers
continue | Continue the training of a DGP emulator
design | Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
design.bundle | Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
design.dgp | Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
design.gp | Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
dgp | Deep Gaussian process emulator construction
draw | Validation plots of a sequential design
draw.bundle | Validation plots of a sequential design
draw.dgp | Validation plots of a sequential design
draw.gp | Validation plots of a sequential design
gp | Gaussian process emulator construction
Hetero | Initialize a heteroskedastic Gaussian likelihood node
init_py | 'python' environment initialization
kernel | Initialize a Gaussian process node
lgp | Linked (D)GP emulator construction
mice | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
mice.bundle | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
mice.dgp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
mice.gp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
NegBin | Initialize a negative Binomial likelihood node
nllik | Calculate negative predicted log-likelihood
pack | Pack GP and DGP emulators into a bundle
pei | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using PEI
pei.bundle | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using PEI
pei.dgp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using PEI
pei.gp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using PEI
plot | Validation plots of a constructed GP, DGP, or linked (D)GP emulator
plot.dgp | Validation plots of a constructed GP, DGP, or linked (D)GP emulator
plot.gp | Validation plots of a constructed GP, DGP, or linked (D)GP emulator
plot.lgp | Validation plots of a constructed GP, DGP, or linked (D)GP emulator
Poisson | Initialize a Poisson likelihood node
predict | Predictions from GP, DGP, or linked (D)GP emulators
predict.dgp | Predictions from GP, DGP, or linked (D)GP emulators
predict.gp | Predictions from GP, DGP, or linked (D)GP emulators
predict.lgp | Predictions from GP, DGP, or linked (D)GP emulators
prune | Static pruning of a DGP emulator
read | Load the stored emulator
set_imp | Reset number of imputations for a DGP emulator
set_linked_idx | Set linked indices
set_seed | Random seed generator
summary | Summary of a constructed GP, DGP, or linked (D)GP emulator
summary.dgp | Summary of a constructed GP, DGP, or linked (D)GP emulator
summary.gp | Summary of a constructed GP, DGP, or linked (D)GP emulator
summary.lgp | Summary of a constructed GP, DGP, or linked (D)GP emulator
trace_plot | Plot of DGP model parameter traces
unpack | Unpack a bundle of (D)GP emulators
update | Update a GP or DGP emulator
update.dgp | Update a GP or DGP emulator
update.gp | Update a GP or DGP emulator
validate | Validate a constructed GP, DGP, or linked (D)GP emulator
validate.dgp | Validate a constructed GP, DGP, or linked (D)GP emulator
validate.gp | Validate a constructed GP, DGP, or linked (D)GP emulator
validate.lgp | Validate a constructed GP, DGP, or linked (D)GP emulator
vigf | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
vigf.bundle | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
vigf.dgp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
vigf.gp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
window | Trim the sequences of model parameters of a DGP emulator
write | Save the constructed emulator