epiworldR-package	epiworldR-package
actions	global-actions
add_globalevent	global-actions
add_tool	tool
add_tool_agent	agents_smallworld
add_tool_n	tool
add_virus	virus
add_virus_agent	agents_smallworld
add_virus_n	virus
agents	agents_smallworld
agents_from_edgelist	agents_smallworld
agents_smallworld	agents_smallworld
as.array.epiworld_hist_transition	epiworld-data
change_state	agents_smallworld
clone_model	epiworld-methods
epiworld-data	epiworld-data
epiworld-methods	epiworld-methods
epiworldR	epiworldR-package
epiworldR-deprecated	epiworldR-deprecated
epiworld_agent	get_agents
epiworld_agents	get_agents
epiworld_diffnet	ModelDiffNet
epiworld_globalevent	global-actions
epiworld_globalevent_set_param	global-actions
epiworld_globalevent_tool	global-actions
epiworld_globalevent_tool_logit	global-actions
epiworld_hist_tool	epiworld-data
epiworld_hist_total	epiworld-data
epiworld_hist_variant	epiworld-data
epiworld_hist_virus	epiworld-data
epiworld_model	epiworld-methods
epiworld_repnum	epiworld-data
epiworld_saver	run_multiple
epiworld_seir	ModelSEIR
epiworld_seirconn	ModelSEIRCONN
epiworld_seird	ModelSEIRD
epiworld_seirdconn	ModelSEIRDCONN
epiworld_sir	ModelSIR
epiworld_sirconn	ModelSIRCONN
epiworld_sird	ModelSIRD
epiworld_sirdconn	ModelSIRDCONN
epiworld_sis	ModelSIS
epiworld_sisd	ModelSISD
epiworld_surv	ModelSURV
epiworld_tool	tool
epiworld_virus	virus
get_agents	get_agents
get_agents_data_ncols	epiworld-methods
get_agents_states	agents_smallworld
get_agents_tools	agents_smallworld
get_generation_time	epiworld-data
get_hist_tool	epiworld-data
get_hist_total	epiworld-data
get_hist_transition_matrix	epiworld-data
get_hist_virus	epiworld-data
get_name	epiworld-methods
get_name_tool	tool
get_name_virus	virus
get_ndays	epiworld-methods
get_network	agents_smallworld
get_n_replicates	epiworld-methods
get_n_tools	epiworld-methods
get_n_viruses	epiworld-methods
get_param	epiworld-methods
get_reproductive_number	epiworld-data
get_state	get_agents
get_states	epiworld-methods
get_today_total	epiworld-data
get_tool	epiworld-methods
get_transition_probability	epiworld-data
get_transmissions	epiworld-data
get_virus	epiworld-methods
global-actions	global-actions
globalaction_fun	epiworldR-deprecated
globalaction_set_params	epiworldR-deprecated
globalaction_tool	epiworldR-deprecated
globalaction_tool_logit	epiworldR-deprecated
globalevent_fun	global-actions
globalevent_set_params	global-actions
globalevent_tool	global-actions
globalevent_tool_logit	global-actions
has_tool	agents_smallworld
has_virus	agents_smallworld
initial_states	epiworld-methods
make_saver	run_multiple
ModelDiffNet	ModelDiffNet
ModelSEIR	ModelSEIR
ModelSEIRCONN	ModelSEIRCONN
ModelSEIRD	ModelSEIRD
ModelSEIRDCONN	ModelSEIRDCONN
ModelSIR	ModelSIR
ModelSIRCONN	ModelSIRCONN
ModelSIRD	ModelSIRD
ModelSIRDCONN	ModelSIRDCONN
ModelSIRLogit	ModelSIRLogit
ModelSIS	ModelSIS
ModelSISD	ModelSISD
ModelSURV	ModelSURV
network	agents_smallworld
plot.epiworld_diffnet	ModelDiffNet
plot.epiworld_generation_time	epiworld-data
plot.epiworld_hist_transition	epiworld-data
plot.epiworld_repnum	epiworld-data
plot.epiworld_seir	ModelSEIR
plot.epiworld_seirconn	ModelSEIRCONN
plot.epiworld_seird	ModelSEIRD
plot.epiworld_seirdconn	ModelSEIRDCONN
plot.epiworld_sir	ModelSIR
plot.epiworld_sirconn	ModelSIRCONN
plot.epiworld_sird	ModelSIRD
plot.epiworld_sirdconn	ModelSIRDCONN
plot.epiworld_sis	ModelSIS
plot.epiworld_sisd	ModelSISD
plot.epiworld_surv	ModelSURV
plot_generation_time	epiworld-data
plot_incidence	epiworld-data
plot_reproductive_number	epiworld-data
print.epiworld_agent	get_agents
print.epiworld_agents	get_agents
print.epiworld_agents_tools	tool
queuing_off	epiworld-methods
queuing_on	epiworld-methods
rm_tool	tool
rm_virus	virus
run	epiworld-methods
run_multiple	run_multiple
run_multiple_get_results	run_multiple
set_agents_data	epiworld-methods
set_death_reduction	tool
set_death_reduction_fun	tool
set_death_reduction_ptr	tool
set_incubation	virus
set_incubation_fun	virus
set_incubation_ptr	virus
set_name	epiworld-methods
set_name_tool	tool
set_name_virus	virus
set_param	epiworld-methods
set_prob_death	virus
set_prob_death_fun	virus
set_prob_death_ptr	virus
set_prob_infecting	virus
set_prob_infecting_fun	virus
set_prob_infecting_ptr	virus
set_prob_recovery	virus
set_prob_recovery_fun	virus
set_prob_recovery_ptr	virus
set_recovery_enhancer	tool
set_recovery_enhancer_fun	tool
set_recovery_enhancer_ptr	tool
set_susceptibility_reduction	tool
set_susceptibility_reduction_fun	tool
set_susceptibility_reduction_ptr	tool
set_transmission_reduction	tool
set_transmission_reduction_fun	tool
set_transmission_reduction_ptr	tool
size	epiworld-methods
summary.epiworld_model	epiworld-methods
tool	tool
tool_fun_logit	tool
verbose_off	epiworld-methods
verbose_on	epiworld-methods
virus	virus
virus_fun_logit	virus
virus_set_state	virus
[.epiworld_agents	get_agents
