# Vignettes and other documentation

## Vignettes from package 'phylosamp'

phylosamp::L1_FalseDiscoveryRate |  | Estimating the linkage false discovery rate from sample size | HTML | source | R code
phylosamp::L2_SampleSize |  | Estimating sample size for transmission linkage from the false discovery rate | HTML | source | R code
phylosamp::L3_SensitivitySpecificity |  | Estimating the sensitivity and specificity of a linkage criteria | HTML | source | R code
phylosamp::L4_IllustrativeExamples |  | Illustrative examples for evaluating transmission linkage | HTML | source | R code
phylosamp::V1_CoefficientDetectionBias |  | Estimating bias in observed variant prevalence | HTML | source | R code
phylosamp::V2_SampleSizeCrossSectional |  | Estimating the sample size needed for variant monitoring (cross-sectional sampling) | HTML | source | R code
phylosamp::V3_ProbCrossSectional |  | Estimating the probability of detecting a variant (cross-sectional sampling) | HTML | source | R code
phylosamp::V4_SampleSizePeriodic |  | Estimating the sample size needed for variant monitoring (periodic sampling) | HTML | source | R code
phylosamp::V5_ProbDetectPeriodic |  | Estimating the probability of detecting a variant (periodic sampling) | HTML | source | R code
phylosamp::V6_IllustrativeExample |  | Variant surveillance example | HTML | source | R code