# Marker-Based Cell Type Purification for Single-Cell Sequencing Data

## Documentation for package ‘scGate’ version 1.6.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

combine_scGate_multiclass | Combine scGate annotations
gating_model | Model creation and editing
genes.blacklist.default | Blocklist of genes for dimensionality reduction
get_scGateDB | Load scGate model database
get_testing_data | Download sample data
load_scGate_model | Load a single scGate model
performance.metrics | Performance metrics
plot_levels | Plot scGate filtering results by level
plot_tree | Plot model tree
plot_UCell_scores | Plot UCell scores by level
query.seurat | Toy dataset to test the package
scGate | Filter single-cell data by cell type
test_my_model | Test your model