# Spatial Analysis of Vectra Immunoflourescent Data

## Documentation for package ‘spatialTIME’ version 1.3.4-3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

bi_NN_G | Bivariate Nearest Neighbor G(r)
bi_pair_correlation | Bivariate Pair Correlation Function
bi_ripleys_k | Bivariate Ripley's K
bi_ripleys_k_WSI | Bivariate Ripley's K for Whole Slide Images
compute_metrics | Calculate Count Based Measures and NN Measures of Spatial Clustering for IF data
create_mif | Create Multiplex Immunoflourescent object
dixons_s | Dixon's S Segregation Statistic
example_clinical | Clinical variables of 229 patients
example_spatial | Example list of 5 spatial TMA data
example_summary | Marker summaries of 229 samples
interaction_variable | Bivariate Interaction Variable
merge_mifs | Merge several MIF objects together
NN_G | Univariate Nearest Neighbor G(r)
pair_correlation | Univariate Pair Correlation Function
plot_immunoflo | Generate plot of TMA point process
ripleys_k | Calculate Ripley's K
subset_mif | Subset mif object on cellular level