Package: MicrobTiSDA
Title: Microbiome Time-Series Data Analysis
Version: 0.1.0
Authors@R: 
    person("Shijia", "Li", email = "s.li2@uva.nl", role = c("aut", "cre"),comment = c(ORCID = "0009-0006-6827-5344"))
Description: Provides tools specifically designed for analyzing longitudinal microbiome data. This tool integrates seven functional modules, providing a systematic framework for microbiome time-series analysis. For more details on inferences involving interspecies interactions see Fisher (2014) <doi:10.1371/journal.pone.0102451>. Details on this package are also described in an unpublished manuscript.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: https://github.com/Lishijiagg/MicrobTiSDA
BugReports: https://github.com/Lishijiagg/MicrobTiSDA/issues
Imports: caret, cluster, dplyr, ggdendro, ggplot2, ggraph, MASS, mgcv,
        plyr, pracma, randomForest, reshape2, scales, splines, stats,
        tibble, tidygraph, tidyr, vegan, visNetwork
Depends: R (>= 3.5)
LazyData: true
LazyDataCompression: xz
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-17 14:32:21 UTC; lishijia
Author: Shijia Li [aut, cre] (ORCID: <https://orcid.org/0009-0006-6827-5344>)
Maintainer: Shijia Li <s.li2@uva.nl>
Repository: CRAN
Date/Publication: 2025-09-22 18:20:02 UTC
Built: R 4.6.0; ; 2026-04-02 16:25:01 UTC; unix
