Package: genoaligner
Type: Package
Title: GPU-Portable Pairwise Sequence Alignment (WFA + Smith-Waterman)
Version: 1.0.0
Authors@R: 
    person("Angel", "Robles-Fernandez", role = c("aut", "cre"),
           email = "a.l.robles.fernandez@gmail.com")
Description: Pairwise sequence alignment from one portable C++17 core: edit-distance
    (Levenshtein / WFA-equivalent) and Smith-Waterman local alignment, both with score
    and CIGAR reconstruction. The core builds and runs anywhere (it is the CPU backend,
    so it needs no GPU toolchain); the wavefront/GPU backend (ROCm/CUDA) computes the
    same results with acceleration and is tracked in the sibling C++ repository. A batch
    API aligns many pairs in one call and reports how many were resolved, so silent
    under-serving is impossible. Designed to slot into data.frame/tibble pipelines.
URL: https://github.com/alrobles/genoaligner-r,
        https://alrobles.github.io/genoaligner-r/
BugReports: https://github.com/alrobles/genoaligner-r/issues
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
Depends: R (>= 4.1.0)
Imports: Rcpp
LinkingTo: Rcpp
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, spelling
SystemRequirements: C++17
NeedsCompilation: yes
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Packaged: 2026-09-13 20:33:24 UTC; alrobles
Author: Angel Robles-Fernandez [aut, cre]
Maintainer: Angel Robles-Fernandez <a.l.robles.fernandez@gmail.com>
Repository: CRAN
Date/Publication: 2026-09-24 04:20:02 UTC
Built: R 4.6.1; x86_64-apple-darwin20; 2026-09-24 07:09:16 UTC; unix
Archs: genoaligner.so.dSYM
