add_metadata	add_metadata
assess_clustering_stability	assess_clustering_stability
assess_feature_stability	assess_feature_stability
assess_nn_stability	assess_nn_stability
automatic_stability_assessment	automatic_stability_assessment
calculate_markers	calculate_markers
calculate_markers_shiny	calculate_markers_shiny
choose_stable_clusters	choose_stable_clusters
Clustering	Clustering-class
Clustering-class	Clustering-class
consensus_cluster	consensus_cluster
create_clustering	create_clustering
create_clustering,character-method	create_clustering
create_clustering,factor-method	create_clustering
create_clustering,hclust-method	create_clustering
create_clustering,integer-method	create_clustering
create_clustering,Matrix-method	create_clustering
create_clustering,matrix-method	create_clustering
create_clustering,numeric-method	create_clustering
create_monocle_default	create_monocle_default
create_monocle_from_clustassess	create_monocle_from_clustassess
create_monocle_from_clustassess_app	create_monocle_from_clustassess_app
create_seurat_object_default	create_seurat_object_default
create_seurat_object_from_clustassess_app	create_seurat_object_from_clustassess_app
element_agreement	element_agreement
element_consistency	element_consistency
element_sim	element_sim
element_sim_elscore	element_sim_elscore
element_sim_matrix	element_sim_matrix
getNNmatrix	getNNmatrix
get_clusters_from_clustassess_object	get_clusters_from_clustassess_object
get_colour_vector_from_palette	get_colour_vector_from_palette
get_highest_prune_param	get_highest_prune_param
get_highest_prune_param_embedding	get_highest_prune_param_embedding
get_nn_conn_comps	get_nn_conn_comps
length,Clustering-method	length-Clustering-method
marker_overlap	marker_overlap
merge_partitions	merge_partitions
merge_resolutions	merge_resolutions
pac_convergence	pac_convergence
pac_landscape	pac_landscape
plot_clustering_difference_facet	plot_clustering_difference_facet
plot_clustering_overall_stability	plot_clustering_overall_stability
plot_clustering_per_value_stability	plot_clustering_per_value_stability
plot_clust_hierarchical	plot_clust_hierarchical
plot_connected_comps_evolution	plot_connected_comps_evolution
plot_feature_overall_stability_boxplot	plot_feature_overall_stability_boxplot
plot_feature_overall_stability_incremental	plot_feature_overall_stability_incremental
plot_feature_per_resolution_stability_boxplot	plot_feature_per_resolution_stability_boxplot
plot_feature_per_resolution_stability_incremental	plot_feature_per_resolution_stability_incremental
plot_feature_stability_ecs_facet	plot_feature_stability_ecs_facet
plot_feature_stability_mb_facet	plot_feature_stability_mb_facet
plot_k_n_partitions	plot_k_n_partitions
plot_k_resolution_corresp	plot_k_resolution_corresp
plot_n_neigh_ecs	plot_n_neigh_ecs
plot_n_neigh_k_correspondence	plot_n_neigh_k_correspondence
print,Clustering-method	print-Clustering-method
server_comparisons	server_comparisons
server_dimensionality_reduction	server_dimensionality_reduction
server_graph_clustering	server_graph_clustering
server_graph_construction	server_graph_construction
server_landing_page	server_landing_page
server_sandbox	server_sandbox
ui_comparisons	ui_comparisons
ui_dimensionality_reduction	ui_dimensionality_reduction
ui_graph_clustering	ui_graph_clustering
ui_graph_construction	ui_graph_construction
ui_landing_page	ui_landing_page
ui_sandbox	ui_sandbox
weighted_element_consistency	weighted_element_consistency
write_objects	write_objects
write_shiny_app	write_shiny_app
write_shiny_app.default	write_shiny_app
write_shiny_app.Seurat	write_shiny_app
