# LncRNA Identification and Analysis Using Heterologous Features

## Documentation for package ‘LncFinder’ version 1.1.6

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

build_model | Build Users' Own Model
compute_EIIP | Extract the EIIP-derived features
compute_EucDistance | Compute Euclidean Distance
compute_FickettScore | Compute Fickett TESTCODE Score
compute_GC | Calculate GC content
compute_hexamerScore | Compute Hexamer Score
compute_kmer | Compute _k_-mer Features
compute_LogDistance | Compute Logarithm Distance
compute_pI | Compute Theoretical Isoelectric Point
demo_dataset | A demo of dataset
demo_DNA.seq | A demo of DNA sequences
demo_SS.seq | A demo of secondary structure sequences
extract_features | Extract the Features
find_orfs | Find ORFs
lnc_finder | Long Non-coding RNA Identification
make_frequencies | Make the frequencies file for new classifier construction
make_referFreq | Make Frequencies File for Log.Dist, Euc.Dist, and hexamer score
read_SS | Read Secondary Structure Information
run_RNAfold | Obtain the Secondary Structure Sequences Using RNAfold
svm_cv | _k_-fold Cross Validation for SVM
svm_tune | Parameter Tuning of SVM