Type: Package
Package: NACHO
Title: NanoString Quality Control Dashboard
Version: 2.0.6
Authors@R: 
    c(person(given = "Mickaël",
             family = "Canouil",
             role = c("aut", "cre"),
             email = "pro@mickael.canouil.dev",
             comment = c(ORCID = "0000-0002-3396-4549")),
      person(given = "Roderick",
             family = "Slieker",
             role = "aut",
             email = "R.C.Slieker@lumc.nl",
             comment = c(ORCID = "0000-0003-0961-9152")),
      person(given = "Gerard",
             family = "Bouland",
             role = "aut",
             email = "G.A.Bouland@lumc.nl"))
Description: NanoString nCounter data are gene expression assays
    where there is no need for the use of enzymes or amplification
    protocols and work with fluorescent barcodes (Geiss et al. (2018)
    <doi:10.1038/nbt1385>). Each barcode is assigned a
    messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
    target can be counted. As a result each count of a specific barcode
    represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
    quality Control dasHbOard) is able to analyse the exported NanoString
    nCounter data and facilitates the user in performing a quality
    control. 'NACHO' does this by visualising quality control metrics,
    expression of control genes, principal components and sample specific
    size factors in an interactive web application.
License: GPL-3
URL: https://github.com/mcanouil/NACHO/, https://m.canouil.dev/NACHO/
BugReports: https://github.com/mcanouil/NACHO/issues
Depends: R (>= 3.6.0)
Imports: utils, data.table, ggplot2 (>= 3.3.0), ggforce (>= 0.3.1),
        ggrepel (>= 0.8.1), knitr (>= 1.25), rmarkdown (>= 1.16), shiny
        (>= 1.4.0), shinyWidgets (>= 0.4.9)
Suggests: roxygen2 (>= 7.2.0), testthat (>= 2.2.1), covr (>= 3.3.2),
        Biobase, GEOquery, limma
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.0
SystemRequirements: pandoc (>= 1.14), pandoc-citeproc
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2024-01-12 18:55:29 UTC; mcanouil
Author: Mickaël Canouil [aut, cre] (<https://orcid.org/0000-0002-3396-4549>),
  Roderick Slieker [aut] (<https://orcid.org/0000-0003-0961-9152>),
  Gerard Bouland [aut]
Maintainer: Mickaël Canouil <pro@mickael.canouil.dev>
Repository: CRAN
Date/Publication: 2024-01-12 19:10:02 UTC
Built: R 4.6.0; ; 2026-03-28 00:14:22 UTC; unix
