RRphylo-package	RRphylo-package
addShift	plotShift
angle.matrix	angle.matrix
colorbar	colorbar
compRates	compRates
conv.map	conv.map
cutPhylo	cutPhylo
DataApes	DataApes
DataCetaceans	DataCetaceans
DataFelids	DataFelids
DataOrnithodirans	DataOrnithodirans
DataSimians	DataSimians
DataUng	DataUng
distNodes	distNodes
evo.dir	evo.dir
fix.poly	fix.poly
getGenus	getGenus
getMommy	getMommy
getSis	getSis
lollipoPlot	lollipoPlot
makeFossil	makeFossil
makeL	makeL
makeL1	makeL1
move.lineage	move.lineage
namesCompare	namesCompare
node.paths	node.paths
overfitPGLS	overfitPGLS
overfitRR	overfitRR
overfitSC	overfitSC
overfitSS	overfitSS
overfitST	overfitST
PGLS_fossil	PGLS_fossil
phyloclust	phyloclust
plotConv	plotConv
plotRates	plotRates
plotRR	plotRR
plotShift	plotShift
plotTrend	plotTrend
random.evolvability.test	random.evolvability.test
rate.map	rate.map
rateHistory	rateHistory
resampleTree	resampleTree
rescaleRR	rescaleRR
retrieve.angles	retrieve.angles
RRphylo	RRphylo
RRphylo-defunct	RRphylo-defunct
RRphylo-deprecated	RRphylo-deprecated
scaleTree	scaleTree
search.conv	search.conv
search.shift	search.shift
search.trend	search.trend
setBM	setBM
sig2BM	sig2BM
sizedsubtree	sizedsubtree
StableTraitsR	StableTraitsR
swap.phylo	RRphylo-defunct
swapONE	swapONE
tips	tips
tree.merger	tree.merger
treeCompare	treeCompare
treedataMatch	treedataMatch
