Package: SMASH
Type: Package
Title: Subclone Multiplicity Allocation and Somatic Heterogeneity
Version: 1.0.0
Date: 2025-02-07
Authors@R: 
	person("Paul","Little",
		email = "pllittle321@gmail.com",
		role = c("aut","cre"))
Description: Cluster user-supplied somatic read counts with corresponding allele-specific copy number and tumor purity to infer feasible underlying intra-tumor heterogeneity in terms of  number of subclones, multiplicity, and allocation (Little et al. (2019) <doi:10.1186/s13073-019-0643-9>).
License: GPL (>= 3)
Imports: Rcpp, stats, smarter, reshape2, ggplot2
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10)
RoxygenNote: 7.2.3
Suggests: knitr, devtools
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2025-02-26 05:10:10 UTC; Admin
Author: Paul Little [aut, cre]
Maintainer: Paul Little <pllittle321@gmail.com>
Repository: CRAN
Date/Publication: 2025-02-27 16:40:06 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2026-03-28 10:58:02 UTC; unix
Archs: SMASH.so.dSYM
