# Calculate Bark Beetle Phenology Using Different Models

## Documentation for package ‘barrks’ version 1.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

analyse.phenology | Analyse a phenology
analyse.phenology.bso | Analyse a BSO generated phenology
barrks_colors | Get 'barrks' default color palettes
barrks_data | Load sample data
barrks_labels | Get 'barrks' default legend labels
bso_get_flight | Get flight of individuals (BSO only)
bso_get_flight_df | Get flight of individuals (BSO only)
bso_get_flight_rst | Get flight of individuals (BSO only)
bso_get_individuals | Get individuals (BSO only)
bso_get_individuals_df | Get individuals (BSO only)
bso_get_individuals_rst | Get individuals (BSO only)
bso_phenology | Central function to calculate a phenology
bso_plot_flight_diagram | Plot a flight diagram (BSO only)
bso_plot_stage_diagram | Plot a stage diagram (BSO only)
bso_translate_phenology | Translate BSO generated phenology
categorize_generations_rst | Make a numeric generations raster categorical
create_daylength_df | Create a data frame of day lengths
create_daylength_rst | Create day length rasters
create_diapause | Create phenological events (onset/diapause/mortality)
create_events | Create phenological events (onset/diapause/mortality)
create_mortality | Create phenological events (onset/diapause/mortality)
create_onset | Create phenological events (onset/diapause/mortality)
create_suntimes_df | Create a data frame of sunrises and sunsets
create_suntimes_rsts | Create rasters that indicate sunrise and sunset
get_development | Get the beetles development
get_development_df | Get the beetles development
get_development_rst | Get the beetles development
get_diapause | Get onset, diapause or mortality
get_diapause_df | Get onset, diapause or mortality
get_diapause_rst | Get onset, diapause or mortality
get_events | Get onset, diapause or mortality
get_generations | Get generations
get_generations_df | Get generations
get_generations_rst | Get generations
get_hibernating_generations_df | Get generations
get_hibernating_generations_rst | Get generations
get_input_data | Get (preprocessed) input data
get_mortality | Get onset, diapause or mortality
get_mortality_df | Get onset, diapause or mortality
get_mortality_rst | Get onset, diapause or mortality
get_onset | Get onset, diapause or mortality
get_onset_df | Get onset, diapause or mortality
get_onset_rst | Get onset, diapause or mortality
list_models | List all models
load_phenology | Save/load a phenology
model | Get a phenology model
model.bso.apply | Use BSO
model.bso.customize | Customize BSO
model.chapy.apply | Use CHAPY
model.chapy.customize | Customize CHAPY
model.joensson.apply | Use the Jönnson model
model.joensson.customize | Customize the Jönsson model
model.lange.apply | Use the Lange model
model.lange.customize | Customize the Lange model
model.phenips.apply | Use PHENIPS
model.phenips.customize | Customize PHENIPS
model.phenips_clim.apply | Use PHENIPS-Clim
model.phenips_clim.customize | Customize PHENIPS-Clim
model.rity.apply | Use RITY
model.rity.customize | Customize RITY
model_combine | Combine different (sub-)models
params | Get model parameters
phenology | Central function to calculate a phenology
plot_development_diagram | Plot a development diagram
properties | Get phenology properties
prop_dates | Get phenology properties
prop_filial_generations | Get phenology properties
prop_first_date | Get phenology properties
prop_hatched_generations | Get phenology properties
prop_last_date | Get phenology properties
prop_sister_broods | Get phenology properties
prop_stations | Get phenology properties
prop_year | Get phenology properties
save_load_phenology | Save/load a phenology
save_phenology | Save/load a phenology
stations | Work with stations
stations_assign | Work with stations
stations_cells | Work with stations
stations_create | Work with stations
stations_names | Work with stations