# Compare Groups, Analytically and Graphically

## Documentation for package ‘cg’ version 1.0-4

- DESCRIPTION file
- Package NEWS

## Help Pages

A B C D E F G I K M N O P Q R S T U V X Y

cg-package | Compare Groups, Analytically and Graphically

## -- A --

aftfit-class | cg package Internal Virtual Classes
anorexiaFT | AnorexiaFT Data Set in the cg package

## -- B --

blockDiag | cg package Internal Utilities
boxplot-method | Box Plot Graph of Groups from a cgOneFactorData object
boxplot.cgOneFactorData | Box Plot Graph of Groups from a cgOneFactorData object
boxplotcensoreddata | cg package Internal Utilities
boxplotStamp | cg package Internal Utilities

## -- C --

canine | Canine Data Set in the cg package
canine.listfmt | Canine Data Set in the cg package
catCharExpr | cg package Internal Utilities
cg | Compare Groups, Analytically and Graphically
cg.largest.empty | cg package Internal Utilities
cgDevice | cg package Internal Utilities
cgInternalClasses | cg package Internal Virtual Classes
cgInternalUtilities | cg package Internal Utilities
cgLineColors | Color Choice order for Graph Lines
cgMessage | cg package Internal Utilities
cgOneFactorComparisonsTable | Create a table of comparisons amongst groups with the cgOneFactorFit object
cgOneFactorComparisonsTable-class | Create a table of comparisons amongst groups with the cgOneFactorFit object
cgOneFactorData | Prepare data object from a data frame for One Factor / One-Way / Unpaired Samples evaluations
cgOneFactorData-class | Prepare data object from a data frame for One Factor / One-Way / Unpaired Samples evaluations
cgOneFactorDescriptiveTable | Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object
cgOneFactorDescriptiveTable-class | Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object
cgOneFactorDownweightedTable | Create a table of downweighted observations from a Resistant & Robust fit.
cgOneFactorDownweightedTable-class | Create a table of downweighted observations from a Resistant & Robust fit.
cgOneFactorFit | Fit models to a cgOneFactorData object
cgOneFactorFit-class | Fit models to a cgOneFactorData object
cgOneFactorGlobalTest | Perform a global Test of significance with cgOneFactorFit object
cgOneFactorGlobalTest-class | Perform a global Test of significance with cgOneFactorFit object
cgOneFactorGrpSummaryTable | Create a table of estimated group means and variability with a cgOneFactorFit object.
cgOneFactorGrpSummaryTable-class | Create a table of estimated group means and variability with a cgOneFactorFit object.
cgOneFactorSampleSizeTable | Estimate Sample Sizes based on a cgOneFactorFit object
cgOneFactorSampleSizeTable-class | Estimate Sample Sizes based on a cgOneFactorFit object
cgPairedDifferenceComparisonsTable | Create a table of comparisons between two groups with the cgPairedDifferenceFit object
cgPairedDifferenceComparisonsTable-class | Create a table of comparisons between two groups with the cgPairedDifferenceFit object
cgPairedDifferenceCorrelationTable | Compute Correlations from a cgPairedDifferenceData object
cgPairedDifferenceCorrelationTable-class | Compute Correlations from a cgPairedDifferenceData object
cgPairedDifferenceData | Prepare data object from a data frame for Paired Samples evaluations
cgPairedDifferenceData-class | Prepare data object from a data frame for Paired Samples evaluations
cgPairedDifferenceDescriptiveTable | Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object
cgPairedDifferenceDescriptiveTable-class | Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object
cgPairedDifferenceDownweightedTable | Create a table of downweighted observations from a Resistant & Robust fit.
cgPairedDifferenceDownweightedTable-class | Create a table of downweighted observations from a Resistant & Robust fit.
cgPairedDifferenceFit | Fit models to a cgPairedDifferenceData object
cgPairedDifferenceFit-class | Fit models to a cgPairedDifferenceData object
cgPairedDifferenceSampleSizeTable | Estimate Sample Sizes based on a cgPairedDifferenceFit object
cgPairedDifferenceSampleSizeTable-class | Estimate Sample Sizes based on a cgPairedDifferenceFit object
cgPairedDifferenceVarianceTable | Compute Variances from a cgPairedDifferenceFit object
cgPairedDifferenceVarianceTable-class | Compute Variances from a cgPairedDifferenceFit object
cgValidity | cg package Validity Checks
characterOrExpression-class | cg package Internal Virtual Classes
characterOrNULL-class | cg package Internal Virtual Classes
chop.matrix | cg package Internal Utilities
chopZeroes | cg package Internal Utilities
comparisons | Create a table of comparisons amongst groups
comparisonsGraph | Graph comparisons specified amongst groups
comparisonsgraph | Create an graph of comparisons
comparisonsGraph-method | Create an graph of the comparisons in a cgOneFactorComparisonsTable object
comparisonsGraph-method | Create an graph of the comparisons in a cgPairedDifferenceComparisonsTable object
comparisonsGraph.cgOneFactorComparisonsTable | Create an graph of the comparisons in a cgOneFactorComparisonsTable object
comparisonsGraph.cgPairedDifferenceComparisonsTable | Create an graph of the comparisons in a cgPairedDifferenceComparisonsTable object
comparisonsGraphStamp | cg package Internal Utilities
comparisonsTable | Create a Table of Comparisons amongst Groups
comparisonsTable-method | Create a table of comparisons amongst groups with the cgOneFactorFit object
comparisonsTable-method | Create a table of comparisons between two groups with the cgPairedDifferenceFit object
comparisonsTable.cgOneFactorFit | Create a table of comparisons amongst groups with the cgOneFactorFit object
comparisonsTable.cgPairedDifferenceFit | Create a table of comparisons between two groups with the cgPairedDifferenceFit object
contrastMatrix | cg package Internal Utilities
correlationTable | Compute Correlations
correlationTable-method | Compute Correlations from a cgPairedDifferenceData object
correlationTable.cgPairedDifferenceData | Compute Correlations from a cgPairedDifferenceData object

## -- D --

dataframeMatrixOrNULL-class | cg package Internal Virtual Classes
dataframeOrNULL-class | cg package Internal Virtual Classes
descriptive.censoreddata | cg package Internal Utilities
descriptiveTable | Compute Descriptive Summary Statistics of Groups
descriptiveTable-method | Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object
descriptiveTable-method | Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object
descriptiveTable.cgOneFactorData | Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object
descriptiveTable.cgPairedDifferenceData | Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object
diffGraph | Graph Paired Differences
diffGraph-method | Graph Paired Differences from a cgPairedDifferenceData object
diffGraph.cgPairedDifferenceData | Graph Paired Differences from a cgPairedDifferenceData object
downweightedTable | Create a table of downweighted observations from a Resistant & Robust fit.
downweightedTable-method | Create a table of downweighted observations from a Resistant & Robust fit.
downweightedTable-method | Create a table of downweighted observations from a Resistant & Robust fit.
downweightedTable.cgOneFactorFit | Create a table of downweighted observations from a Resistant & Robust fit.
downweightedTable.cgPairedDifferenceFit | Create a table of downweighted observations from a Resistant & Robust fit.

## -- E --

errorBarGraph | Create an Error Bar graph amongst groups
errorbargraph | Create an error bar graph based on pairwise multiple comparisons
errorBarGraph-method | Create an Error Bar graph amongst groups in a cgOneFactorFit object
errorBarGraph.cgOneFactorFit | Create an Error Bar graph amongst groups in a cgOneFactorFit object
errorBarGraphApproximateStamp | cg package Internal Utilities
errorBarGraphStamp | cg package Internal Utilities

## -- F --

factorInSeq | cg package Internal Utilities
fit | Fit models to data
fit-method | Fit models to a cgOneFactorData object
fit-method | Fit models to a cgPairedDifferenceData object
fit.cgOneFactorData | Fit models to a cgOneFactorData object
fit.cgPairedDifferenceData | Fit models to a cgPairedDifferenceData object
fmtDifference | cg package Internal Utilities
fmtPercent | cg package Internal Utilities
fmtPvalue | cg package Internal Utilities
fmtRatio | cg package Internal Utilities
fmtRatioToPercent | cg package Internal Utilities
fround | cg package Internal Utilities
fround.charcens | cg package Internal Utilities

## -- G --

geoMean | cg package Internal Utilities
getDotsArgName | cg package Validity Checks
getNumDigits | cg package Internal Utilities
globalTest | Perform a global test of significance
globalTest-method | Perform a global Test of significance with cgOneFactorFit object
globalTest.cgOneFactorFit | Perform a global Test of significance with cgOneFactorFit object
gmcsfcens | GM-CSF censored data set in the cg package
gmcsfcens.listfmt | GM-CSF censored data set in the cg package
gmcsfcens.listfmt1 | GM-CSF censored data set in the cg package
gmcsfcens.listfmt2 | GM-CSF censored data set in the cg package
gmcsfcens.listfmt3 | GM-CSF censored data set in the cg package
graphStampCG | cg package Internal Utilities
grpsummary | cg package Internal Utilities
grpSummaryTable | Create a table of estimated group means and variability
grpSummaryTable-method | Create a table of estimated group means and variability with a cgOneFactorFit object.
grpSummaryTable.cgOneFactorFit | Create a table of estimated group means and variability with a cgOneFactorFit object.

## -- I --

isAllEqual | cg package Internal Utilities

## -- K --

kmGraph | Graph Distribution Functions of Groups
kmGraph-method | Graph Distribution Functions of Groups in a cgOneFactorData object
kmGraph.cgOneFactorData | Graph Distribution Functions of Groups in a cgOneFactorData object

## -- M --

makeCensored | cg package Internal Utilities
makeContrastVec | cg package Internal Utilities
makeEndptLabel | cg package Internal Utilities
makeTickMarks | cg package Internal Utilities
makeZeroScore | cg package Internal Utilities
minmaxTicks | cg package Internal Utilities
multcompDone | cg package Internal Utilities
multcompInform | cg package Internal Utilities

## -- N --

numericOrNULL-class | cg package Internal Virtual Classes

## -- O --

olsfit-class | cg package Internal Virtual Classes

## -- P --

pairwisecompsmatrix | cg package Internal Utilities
paragraphWrap | cg package Internal Utilities
parsePartialName | cg package Validity Checks
pctToRatio | cg package Internal Utilities
plotGrpNameTicks | cg package Internal Utilities
pointGraph | Graph Individual Data Points of Groups
pointGraph-method | Graph Individual Data Points in a cgOneFactorData object
pointGraph.cgOneFactorData | Graph Individual Data Points in a cgOneFactorData object
prepare | Prepare a cg data object from a data frame
prepareCGOneFactorData | Prepare data object from a data frame for One Factor / One-Way / Unpaired Samples evaluations
prepareCGPairedDifferenceData | Prepare data object from a data frame for Paired Samples evaluations
print-method | Print One Factor Comparisons Table object with some format options
print-method | Print a One Factor Descriptive Table object with some format options
print-method | Print Downweighted Observations Table object with some format options
print-method | Print One Factor Model Fit object with some format options
print-method | Print One Factor Global F-test object with some format options
print-method | Print One Factor Group Summary Table object with some format options
print-method | Print a One Factor Sample Size Table object with some format options
print-method | Print Paired Difference Comparisons Table object with some format options
print-method | Print a Paired Difference Correlation Table object with some format options
print-method | Print a Paired Difference Descriptive Table object with some format options
print-method | Print Downweighted Observations Table object with some format options
print-method | Print One Factor Model Fit object with some format options
print-method | Print a Paired Difference Sample Size Table object with some format options
print-method | Print a Paired Difference Variance Table object with some format options
print.cgOneFactorComparisonsTable | Print One Factor Comparisons Table object with some format options
print.cgOneFactorDescriptiveTable | Print a One Factor Descriptive Table object with some format options
print.cgOneFactorDownweightedTable | Print Downweighted Observations Table object with some format options
print.cgOneFactorFit | Print One Factor Model Fit object with some format options
print.cgOneFactorGlobalTest | Print One Factor Global F-test object with some format options
print.cgOneFactorGrpSummaryTable | Print One Factor Group Summary Table object with some format options
print.cgOneFactorSampleSizeTable | Print a One Factor Sample Size Table object with some format options
print.cgPairedDifferenceComparisonsTable | Print Paired Difference Comparisons Table object with some format options
print.cgPairedDifferenceCorrelationTable | Print a Paired Difference Correlation Table object with some format options
print.cgPairedDifferenceDescriptiveTable | Print a Paired Difference Descriptive Table object with some format options
print.cgPairedDifferenceDownweightedTable | Print Downweighted Observations Table object with some format options
print.cgPairedDifferenceFit | Print One Factor Model Fit object with some format options
print.cgPairedDifferenceSampleSizeTable | Print a Paired Difference Sample Size Table object with some format options
print.cgPairedDifferenceVarianceTable | Print a Paired Difference Variance Table object with some format options
profileGraph | Graph Profiles of Experimental Units
profileGraph-method | Graph Profiles of Experimental Unit Pairs in a cgPairedDifferenceData object
profileGraph.cgPairedDifferenceData | Graph Profiles of Experimental Unit Pairs in a cgPairedDifferenceData object

## -- Q --

qminmin | cg package Internal Utilities
qqGraph | Quantile-Quantile Graphs
qqGraph-method | Quantile-Quantile (QQ) Graphs of a cgOneFactorFit object
qqGraph-method | Quantile-Quantile (QQ) Graphs of a cgPairedDifferenceFit object
qqGraph.cgOneFactorFit | Quantile-Quantile (QQ) Graphs of a cgOneFactorFit object
qqGraph.cgPairedDifferenceFit | Quantile-Quantile (QQ) Graphs of a cgPairedDifferenceFit object

## -- R --

rangeExtend | cg package Internal Utilities
reportInvalidArg | cg package Validity Checks
residualgrptrend.helper | cg package Internal Utilities
rmTicks | cg package Internal Utilities
rrfit-class | cg package Internal Virtual Classes

## -- S --

samplesize | cg package Internal Utilities
samplesize.default | cg package Internal Utilities
samplesizeGraph | Graph Estimated Sample Sizes
samplesizegraph | cg package Internal Utilities
samplesizeGraph-method | Graph estimated sample sizes from a cgOneFactorSampleSizeTable object
samplesizeGraph-method | Graph estimated sample sizes from a cgPairedDifferenceSampleSizeTable object
samplesizeGraph.cgOneFactorSampleSizeTable | Graph estimated sample sizes from a cgOneFactorSampleSizeTable object
samplesizeGraph.cgPairedDifferenceSampleSizeTable | Graph estimated sample sizes from a cgPairedDifferenceSampleSizeTable object
samplesizeTable | Estimate Required Sample Sizes
samplesizeTable-method | Estimate Sample Sizes based on a cgOneFactorFit object
samplesizeTable-method | Estimate Sample Sizes based on a cgPairedDifferenceFit object
samplesizeTable.cgOneFactorFit | Estimate Sample Sizes based on a cgOneFactorFit object
samplesizeTable.cgPairedDifferenceFit | Estimate Sample Sizes based on a cgPairedDifferenceFit object
scaleVar | cg package Internal Utilities
seeHelpFile | cg package Internal Utilities
setupAxisTicks | cg package Internal Utilities
setupGrpNameTicks | cg package Internal Utilities
setupLog10AxisTicks | cg package Internal Utilities
show-method | Show a One Factor Comparisons Table object from the cg package
show-method | Show a One Factor Descriptive Table object from the cg package
show-method | Show a One Factor Downweighted Table object from the cg package
show-method | Show a Global Test object from the cg package
show-method | Show a One Factor Group Summary Table object from the cg package
show-method | Show a One Factor Sample Size Table object from the cg package
show-method | Show a Paired Difference Data Comparisons Table object from the cg package
show-method | Show a Paired Difference Correlation Table object from the cg package
show-method | Show a Paired Difference Descriptive Table object from the cg package
show-method | Show a Paired Difference Downweighted Table object from the cg package
show-method | Show a Paired Difference Sample Size Table object from the cg package
show-method | Show a Paired Difference Variance Table object from the cg package
show.cgOneFactorComparisonsTable | Show a One Factor Comparisons Table object from the cg package
show.cgOneFactorDescriptiveTable | Show a One Factor Descriptive Table object from the cg package
show.cgOneFactorDownweightedTable | Show a One Factor Downweighted Table object from the cg package
show.cgOneFactorGlobalTest | Show a Global Test object from the cg package
show.cgOneFactorGrpSummaryTable | Show a One Factor Group Summary Table object from the cg package
show.cgOneFactorSampleSizeTable | Show a One Factor Sample Size Table object from the cg package
show.cgPairedDifferenceComparisonsTable | Show a Paired Difference Data Comparisons Table object from the cg package
show.cgPairedDifferenceCorrelationTable | Show a Paired Difference Correlation Table object from the cg package
show.cgPairedDifferenceDescriptiveTable | Show a Paired Difference Descriptive Table object from the cg package
show.cgPairedDifferenceDownweightedTable | Show a Paired Difference Downweighted Table object from the cg package
show.cgPairedDifferenceSampleSizeTable | Show a Paired Difference Sample Size Table object from the cg package
show.cgPairedDifferenceVarianceTable | Show a Paired Difference Variance Table object from the cg package
showObj | Show raw form of an object from the cg package
showObj-method | Show a Fitted Model object from the cg package
showObj-method | Show a Fitted Model object from the cg package
showObj.cgOneFactorFit | Show a Fitted Model object from the cg package
showObj.cgPairedDifferenceFit | Show a Fitted Model object from the cg package
stndErr | cg package Internal Utilities
stripmiss | cg package Internal Utilities
summary-method | Summary display of a One Factor Model Fit object with some format options
summary-method | Summary display of a Paired Difference Model Fit object with some format options
summary.cgOneFactorFit | Summary display of a One Factor Model Fit object with some format options
summary.cgPairedDifferenceFit | Summary display of a Paired Difference Model Fit object with some format options

## -- T --

trimWhiteSpace | cg package Internal Utilities
tryAgain | cg package Internal Utilities

## -- U --

unpaste | cg package Internal Utilities
unwind | cg package Internal Utilities
unwrap | cg package Internal Utilities
uvfit-class | cg package Internal Virtual Classes

## -- V --

validAddConstant | cg package Validity Checks
validAft | cg package Validity Checks
validAlpha | cg package Validity Checks
validArgDigits | cg package Validity Checks
validArgMatch | cg package Validity Checks
validArgModel | cg package Validity Checks
validAtomicVec | cg package Validity Checks
validBoolean | cg package Validity Checks
validCensor | cg package Validity Checks
validCGOneFacGroupColDfr | cg package Validity Checks
validCGOneFacListedDfr | cg package Validity Checks
validCharacter | cg package Validity Checks
validComparisonType | cg package Validity Checks
validCutoffWt | cg package Validity Checks
validDataFormat | cg package Validity Checks
validDenDf | cg package Validity Checks
validDotsArg | cg package Validity Checks
validDotsArgs | cg package Validity Checks
validEqualLength | cg package Validity Checks
validErrorDf | cg package Validity Checks
validEstimates | cg package Validity Checks
validFitType | cg package Validity Checks
validGrpNames | cg package Validity Checks
validList | cg package Validity Checks
validN | cg package Validity Checks
validNumeric | cg package Validity Checks
validNumericOrCensored | cg package Validity Checks
validPower | cg package Validity Checks
validZeroScore | cg package Validity Checks
varianceGraph | Variance Graphs
varianceGraph-method | Equal Variance Graphs assessment of cgOneFactorFit object
varianceGraph.cgOneFactorFit | Equal Variance Graphs assessment of cgOneFactorFit object
varianceTable | Compute Variance Components
varianceTable-method | Compute Variances from a cgPairedDifferenceFit object
varianceTable.cgPairedDifferenceFit | Compute Variances from a cgPairedDifferenceFit object

## -- X --

xTicksCex | cg package Internal Utilities

## -- Y --

yTicksCex | cg package Internal Utilities