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| AlignStat-package | AlignStat: A tool for the statistical comparison of alternative multiple sequence alignments |
| AlignStat | AlignStat: A tool for the statistical comparison of alternative multiple sequence alignments |
| compare_alignments | Compare alternative multiple sequence alignments |
| comparison_alignment | Comparison Alignment |
| plot_dissimilarity_matrix | A heatmap plot of the dissimilarity matrix of two multiple sequence alignments |
| plot_dissimilarity_summary | An area plot summary of the different causes of column dissimilarity between two multiple sequence alignments |
| plot_similarity_heatmap | A heatmap plot of the column identities between two multiple sequence alignments |
| plot_similarity_summary | A line plot summary of column similarity between two multiple sequence alignments |
| plot_SP_summary | A line plot summary of sum of pairs score between two multiple sequence alignments |
| reference_alignment | Reference Alignment |