Electronic Health Record (EHR) Data Processing and Analysis Tool


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Documentation for package ‘EHR’ version 0.3-1

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EHR-package Electronic Health Record (EHR) Data Processing and Analysis Tool
addLastDose Add Lastdose Data
analysisPheWAS Statistical Analysis for PheWAS
buildDose Combine Dose Data
collapseDose Collapse Dose Data
dataTransformation Data Transformation
dd dd
dd.baseline dd.baseline
dd.baseline.small dd.baseline.small
dd.small dd.small
EHR Electronic Health Record (EHR) Data Processing and Analysis Tool
extractMed Extract medication information from clinical notes
freqNum Convert Character Frequency to Numeric
lam_metadata Example of Metadata for Lamotrigine Data
lam_mxr_parsed Example of Lamotrigine Output from 'parseMedExtractR'
Logistf Firth's penalized-likelihood logistic regression with more decimal places of p-value than 'logistf' function in the R package 'logistf'
makeDose Make Dose Data
parseCLAMP Parse CLAMP NLP Output
parseMedEx Parse MedEx NLP Output
parseMedExtractR Parse medExtractR NLP Output
parseMedXN Parse MedXN NLP Output
processLastDose Process and standardize extracted last dose times
readTransform Read and Transform
stdzDose Standardize Dose Entity
stdzDuration Standardize Duration Entity
stdzFreq Standardize Frequency Entity
stdzRoute Standardize Route Entity
stdzStrength Standardize Strength Entity
tac_lab Example of Lab Time Data for Tacrolimus
tac_metadata Example of Metadata for Tacrolimus Data
tac_mxr_parsed Example of Tacrolimus Output from 'parseMedExtractR'
zeroOneTable Make Zero One Contingency Tables