A C E F G I L P R S T U W misc
add.dosing | Add dosing to eventTable |
add.sampling | Add sampling to eventTable |
as.character.rxEvid | EVID formatting for tibble and other places. |
as.character.rxRateDur | Creates a rxRateDur object |
as.data.table.rxEt | Convert an event table to a data.table |
as.et | Coerce object to data.frame |
as.et.default | Coerce object to data.frame |
as.rxEvid | EVID formatting for tibble and other places. |
as.rxRateDur | Creates a rxRateDur object |
as_tibble.rxEt | Convert to tbl |
c.rxEvid | EVID formatting for tibble and other places. |
c.rxRateDur | EVID formatting for tibble and other places. |
coef.RxODE | Return the RxODE coefficients |
cvPost | Sample a covariance Matrix from the Posterior Inverse Wishart distribution. |
et | Event Table Function |
et.default | Event Table Function |
et.RxODE | Event Table Function |
et.rxParams | Event Table Function |
et.rxSolve | Event Table Function |
etExpand | Expand additional doses |
etRbind | Combining event tables |
etRep | Repeat an RxODE event table |
etSeq | Sequence of event tables |
eventTable | Create an event table object |
expit | logit and inverse logit (expit) functions |
forderForceBase | Force using base order for RxODE radix sorting |
format.rxEvid | EVID formatting for tibble and other places. |
format.rxRateDur | EVID formatting for tibble and other places. |
gammap | Gammap: normalized lower incomplete gamma function |
gammapDer | gammapDer: derivative of gammap |
gammapInv | gammapInv and gammapInva: Inverses of normalized gammap function |
gammapInva | gammapInv and gammapInva: Inverses of normalized gammap function |
gammaq | Gammaq: normalized upper incomplete gamma function |
gammaqInv | gammaqInv and gammaqInva: Inverses of normalized gammaq function |
gammaqInva | gammaqInv and gammaqInva: Inverses of normalized gammaq function |
genShinyApp.template | Generate an example (template) of a dosing regimen shiny app |
geom_amt | Dosing/Amt geom/stat |
geom_cens | Censoring geom/stat |
getRxThreads | Get/Set the number of threads that RxODE uses |
guide_none | Empty Guide |
invWR1d | One correlation sample from the Inverse Wishart distribution |
is.rxEt | Check to see if this is an rxEt object. |
is.rxSolve | Check to see if this is an rxSolve object. |
logit | logit and inverse logit (expit) functions |
logitNormInfo | logit and inverse logit (expit) functions |
lowergamma | lowergamma: upper incomplete gamma function |
phi | Cumulative distribution of standard normal |
pillar_shaft.rxEvid | EVID formatting for tibble and other places. |
pillar_shaft.rxRateDur | Creates a rxRateDur object |
predict.rxEt | Solving & Simulation of a ODE/solved system (and solving options) equation |
predict.RxODE | Solving & Simulation of a ODE/solved system (and solving options) equation |
predict.rxParams | Solving & Simulation of a ODE/solved system (and solving options) equation |
predict.rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
print.rxEvid | EVID formatting for tibble and other places. |
print.RxODE | Print information about the RxODE object. |
probit | probit and inverse probit functions |
probitInv | probit and inverse probit functions |
probitNormInfo | logit and inverse logit (expit) functions |
rbind.rxEt | Combining event tables |
rep.rxEt | Repeat an RxODE event table |
rinvchisq | Scaled Inverse Chi Squared distribution |
rLKJ1 | One correlation sample from the LKJ distribution |
rxAddReturn | Add a return statment to a function. |
rxAllowUnload | Allow unloading of dlls |
rxAssignPtr | Assign pointer based on model variables |
rxbeta | Simulate beta variable from threefry generator |
rxbinom | Simulate Binomial variable from threefry generator |
rxcauchy | Simulate Cauchy variable from threefry generator |
rxChain | rxChain Chain or add item to solved system of equations |
rxchisq | Simulate chi-squared variable from threefry generator |
rxClean | Cleanup anonymous DLLs by unloading them |
rxCompile | Compile a model if needed |
rxCompile.character | Compile a model if needed |
rxCompile.rxDll | Compile a model if needed |
rxCompile.rxModelVars | Compile a model if needed |
rxCompile.RxODE | Compile a model if needed |
rxControl | Solving & Simulation of a ODE/solved system (and solving options) equation |
rxCores | Get/Set the number of threads that RxODE uses |
rxCreateCache | This will create the cache directory for RxODE to save between sessions |
rxD | Add to RxODE's derivative tables |
rxDelete | Delete the DLL for the model |
rxDerived | Calculate derived parameters for the 1-, 2-, and 3- compartment linear models. |
rxDfdy | Jacobian and parameter derivatives |
rxEvid | EVID formatting for tibble and other places. |
rxexp | Simulate exponential variable from threefry generator |
rxf | Simulate F variable from threefry generator |
rxFromSE | RxODE to symengine environment |
rxFun | Add user function to RxODE |
rxgamma | Simulate gamma variable from threefry generator |
rxGenSaem | Generate pred-only SAEM RxODE model |
rxgeom | Simulate geometric variable from threefry generator |
rxGetLin | Get the linear compartment model true function |
rxGetRxODE | Get RxODE model from object |
rxHtml | Format rxSolve and related objects as html. |
rxHtml.rxSolve | Format rxSolve and related objects as html. |
rxIndLinState | Set the preferred factoring by state |
rxIndLinStrategy | This sets the inductive linearization strategy for matrix building |
rxInv | Invert matrix using RcppArmadillo. |
rxIsCurrent | Checks if the RxODE object was built with the current build |
rxLhs | Left handed Variables |
rxLock | Lock/unlocking of RxODE dll file |
rxNorm | Get the normalized model |
rxnorm | Simulate random normal variable from threefry/vandercorput generator |
rxnormV | Simulate random normal variable from threefry/vandercorput generator |
RxODE | Create an ODE-based model specification |
rxOptExpr | Optimize RxODE for computer evaluation |
rxParam | Parameters specified by the model |
rxParams | Parameters specified by the model |
rxParams.rxEt | Parameters specified by the model |
rxParams.RxODE | Parameters specified by the model |
rxParams.rxSolve | Parameters specified by the model |
rxPkg | Creates a package from compiled RxODE models |
rxpois | Simulate random Poisson variable from threefry generator |
rxPp | Simulate a from a Poisson process |
rxProgress | RxODE progress bar functions |
rxProgressAbort | RxODE progress bar functions |
rxProgressStop | RxODE progress bar functions |
rxRandNV | Create a random "normal" matrix using vandercorput generator |
rxRateDur | Creates a rxRateDur object |
rxRmFun | Add user function to RxODE |
rxRmvn | Simulate from a (truncated) multivariate normal |
rxS | Load a model into a symengine environment |
rxSetIni0 | Set Initial conditions to time zero instead of the first observed/dosed time |
rxSetProd | Defunct setting of product |
rxSetProgressBar | Set timing for progress bar |
rxSetSum | Defunct setting of sum |
rxShiny | Use Shiny to help develop an RxODE model |
rxShiny.default | Use Shiny to help develop an RxODE model |
rxShiny.rxSolve | Use Shiny to help develop an RxODE model |
rxSimThetaOmega | Simulate Parameters from a Theta/Omega specification |
rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
rxSolve.default | Solving & Simulation of a ODE/solved system (and solving options) equation |
rxStack | Stack a solved object for things like ggplot |
rxState | State variables |
rxSumProdModel | Recast model in terms of sum/prod |
rxSupportedFuns | Get list of supported functions |
rxSuppressMsg | Respect suppress messages |
rxSymInvChol | Get Omega^-1 and derivatives |
rxSyncOptions | Sync options with RxODE variables |
rxt | Simulate student t variable from threefry generator |
rxTempDir | Get the RxODE temporary directory |
rxTest | Validate RxODE This allows easy validation/qualification of nlmixr by running the testing suite on your system. |
rxTheme | rxTheme is the RxODE theme for plots |
rxTick | RxODE progress bar functions |
rxToSE | RxODE to symengine environment |
rxTrans | Translate the model to C code if needed |
rxTrans.character | Translate the model to C code if needed |
rxTrans.default | Translate the model to C code if needed |
rxunif | Simulate uniform variable from threefry generator |
rxUnloadAll | Unloads all RxODE compiled DLLs |
rxUnlock | Lock/unlocking of RxODE dll file |
rxUse | Use model object in your package |
rxValidate | Validate RxODE This allows easy validation/qualification of nlmixr by running the testing suite on your system. |
rxweibull | Simulate Weibull variable from threefry generator |
rxWinSetup | Setup Windows components for RxODE |
seq.rxEt | Sequence of event tables |
setRxThreads | Get/Set the number of threads that RxODE uses |
simulate.RxODE | Solving & Simulation of a ODE/solved system (and solving options) equation |
simulate.rxParams | Solving & Simulation of a ODE/solved system (and solving options) equation |
simulate.rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
solve.rxEt | Solving & Simulation of a ODE/solved system (and solving options) equation |
solve.RxODE | Solving & Simulation of a ODE/solved system (and solving options) equation |
solve.rxParams | Solving & Simulation of a ODE/solved system (and solving options) equation |
solve.rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
stat_amt | Dosing/Amt geom/stat |
stat_cens | Censoring geom/stat |
summary.RxODE | Print expanded information about the RxODE object. |
type_sum.rxEvid | EVID formatting for tibble and other places. |
type_sum.rxRateDur | Creates a rxRateDur object |
update.rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
uppergamma | uppergamma: upper incomplete gamma function |
write.template.server | Generate an example (template) of a dosing regimen shiny app |
write.template.ui | Generate an example (template) of a dosing regimen shiny app |
+.solveRxDll | rxChain Chain or add item to solved system of equations |
.rxFinalizeInner | Finalize inner RxODE based on symengine saved info |
.rxFinalizePred | Finalize RxODE pred based on symengine saved info |
.rxFromSE | RxODE to symengine environment |
.rxGenEBE | Generate pieces for EBE only problem |
.rxGenEtaS | Generate the ETA sensitivities for FO related methods |
.rxGenFoce | Generate FOCE without interaction |
.rxGenFocei | Generate pieces for FOCEi inner problem |
.rxGenFunState | Get the state information for the current model |
.rxGenHdEta | Generate the d(err)/d(eta) values for FO related methods |
.rxGenPred | Generate Augmented pred/err RxODE model |
.rxRmPrint | Remove print statements |
.rxToSE | RxODE to symengine environment |
.rxWinRtoolsPath | Setup Rtools path |
.rxWithOptions | Temporarily set options then restore them while running code |
.rxWithWd | Temporarily set options then restore them while running code |
.setWarnIdSort | Turn on/off warnings for ID sorting. |
[.rxEvid | EVID formatting for tibble and other places. |
[.rxRateDur | Creates a rxRateDur object |
[[.rxEvid | EVID formatting for tibble and other places. |
[[.rxRateDur | Creates a rxRateDur object |