Time Machine


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Documentation for package ‘TimeMachine’ version 1.2.1

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density.tm Log-likelihood Estimation using the Time Machine
full.transitions Full Transition Matrix Computation
mean.tm Log-likelihood Estimation using the Time Machine
mu.mle Maximum-Likelihood Estimation of the Mutation Rate
pdm Example Dataset
pophistory History of Population Size
pophistory.tm History of Population Size
print.tm Log-likelihood Estimation using the Time Machine
quantile.tm Log-likelihood Estimation using the Time Machine
sample.pop Sample Populations from the Wright-Fisher Model
stationary.dist Compute Stationary Distribution of a Markov Chain
summary.tm Log-likelihood Estimation using the Time Machine
time-dist Time to Coalescent Event or Mutation
tm Log-likelihood Estimation using the Time Machine
ttc Time to Coalescent Event or Mutation
ttc.tm Time to Coalescent Event or Mutation
ttm Time to Coalescent Event or Mutation
ttm.tm Time to Coalescent Event or Mutation