A B C D E F G I K L M O P R S T U V W
axials | Estimate the axial dispersal distance of a kernel |
axials_add | Add axial distributions |
axials_combine | Combine axial distributions to produce a mixed distribution |
axials_decompose | Decompose an axial distribution into simple components |
axials_standard | Takes (at least) two vectors of kinship dispersal distances from defined kinship categories, and returns a resulting calculation of the parent-offspring (intergenerational) kinship dispersal kernel Further tests |
axials_subtract | Subtract axial distributions |
axpermute | Estimate the axial dispersal distance of a kernel with confidence intervals |
axpermute_standard | Takes (at least) two vectors of kinship dispersal distances from defined kinship categories, and returns a resulting calculation of the parent-offspring (intergenerational) kinship dispersal kernel with bootstrap-based confidence intervals. Further tests |
axpermute_subtract | Subtract axial distributions with confidence intervals |
breedsigma | kindisperse - access sigmas of KinPairSimulation objects |
breedsigma-method | ) |
breedsigma<- | Title |
check_valid_kinship | Check if vector of kinship categories contains all valid entries |
check_valid_lifestage | Check if vector of lifestages contains all valid entries |
csv_to_kinpair | Reads .csv and converts to KinPairData object |
df_to_kinpair | Convert dataframe or tibble to KinPairData class |
display_appdata | Show printout of named items stored in appdata. |
distances | Access distances (generic for KinPairData class) |
distances-method | Constructor method for 'KinPairData' objects. |
elongate | Change the shape (aspect ratio) of a rectangle while preserving area |
filtertype | Access filter type of KinPairSimulation object |
filtertype-method | ) |
filtertype<- | Title |
gravsigma | kindisperse - access sigmas of KinPairSimulation objects |
gravsigma-method | ) |
gravsigma<- | Title |
initialize-method | Constructor method for 'KinPairData' objects. |
initialize-method | ) |
initsigma | kindisperse - access sigmas of KinPairSimulation objects |
initsigma-method | ) |
initsigma<- | Title |
is.KinPairData | Check if object is of class KinPairData |
is.KinPairSimulation | Check if object is of class KinPairSimulation |
kernelshape | kindisperse - access kerneltype of KinPairSimulation object |
kernelshape-method | ) |
kerneltype | kindisperse - access kerneltype of KinPairSimulation object |
kerneltype-method | ) |
kerneltype<- | Title |
KinPairData | Formal class "KinPairData" |
KinPairSimulation | KinPairSimulation Class |
KinPairSimulation_composite | Constructor for KinPairSimulation Class (composite) |
KinPairSimulation_simple | Constructor for KinPairSimulation Class (simple) |
kinpair_to_csv | Write KinPairData object in .csv format (strips extra data) |
kinpair_to_tibble | Extract KinPairData class object to tibble |
kinpair_to_tsv | Write KinPairData object in .tsv format (strips extra data) |
kinship | Access or assign kin category (generic for KinPairData class) |
kinship-method | Constructor method for 'KinPairData' objects. |
kinship<- | Access or assign kin category (generic for KinPairData class) |
kinship<--method | Constructor method for 'KinPairData' objects. |
lifestage | Access or assign lifestage (generic for KinPairData class) |
lifestage-method | Constructor method for 'KinPairData' objects. |
lifestage<- | Access or assign lifestage (generic for KinPairData class) |
lifestage<--method | Constructor method for 'KinPairData' objects. |
lower | Access & filter by filter parameters of KinPairSimulation Object |
lower-method | ) |
lower<- | Access & filter by filter parameters of KinPairSimulation Object |
lower<--method | ) |
mentari | Position & kinship information of _Aedes aegypti_ from Mentari Court, Malaysia |
mount_appdata | Mount KinPairData Objects for use in kindisperse app |
ovisigma | kindisperse - access sigmas of KinPairSimulation objects |
ovisigma-method | ) |
ovisigma<- | Title |
posigma | kindisperse - access sigmas of KinPairSimulation objects |
posigma-method | ) |
posigma<- | Title |
read_kindata | Reads .kindata filetype back to KinPairData or KinPairSimulation object. |
rebase_dims | Change the dimensions of a KinPairSimulation Object and shift kinpairs so at least one individual is within the area |
reset_appdata | Reset kindisperse appdata |
reset_tempdata | Reset app tempdata (internal mem) |
retrieveall_appdata | Retrieve all KinPairData objects from appdata (as list) |
retrieve_appdata | Retrieve KinPairData object from appdata (single) |
retrieve_tempdata | Retrieve all tempdata (internal mem) from app (as list) |
run_kindisperse | Run kindisperse app |
sampledims | Access & filter by filter parameters of KinPairSimulation Object |
sampledims-method | ) |
sampledims<- | Access & filter by filter parameters of KinPairSimulation Object |
sampledims<--method | ) |
samplenum | Access & filter by filter parameters of KinPairSimulation Object |
samplenum-method | ) |
samplenum<- | Access & filter by filter parameters of KinPairSimulation Object |
samplenum<--method | ) |
sample_kindist | Subsample and filter a KinPairSimulation Object |
show-method | Constructor method for 'KinPairData' objects. |
show-method | ) |
simdims | Access simulation dimensions of KinPairSimulation object |
simdims-method | ) |
simdims<- | Title |
simgraph_data | Simple kin dispersal simulation for graphical display. (returns the data side as a tibble). |
simgraph_graph | Simple kin dispersal simulation for graphical display. (graphs the pre-existing simulation). |
simtype | kindisperse - access simtype of KinPairSimulation object |
simtype-method | ) |
simtype<- | Title |
simulate_kindist_composite | Simulate kin dispersal distance pairs with composite sigmas |
simulate_kindist_simple | Simulate kin dispersal distance pairs with simple sigma |
spacing | Access & filter by filter parameters of KinPairSimulation Object |
spacing-method | ) |
spacing<- | Access & filter by filter parameters of KinPairSimulation Object |
spacing<--method | ) |
tsv_to_kinpair | Reads .tsv and converts to KinPairData object |
unmount_appdata | Unmount a KinPairData Object (clear slot from appdata environment) |
upper | Access & filter by filter parameters of KinPairSimulation Object |
upper-method | ) |
upper<- | Access & filter by filter parameters of KinPairSimulation Object |
upper<--method | ) |
vector_to_kinpair | Convert vector of kin separation distances to KinPairData class |
write_kindata | Write KinPairData or KinPairSimulation object in .kindata format (no information lost) |