Prepare Species Distributions for the Use in Phylogenetic Analyses


[Up] [Top]

Documentation for package ‘speciesgeocodeR’ version 1.0-4

Help Pages

speciesgeocodeR-package Prepare Species Distributions for the Use in Phylogenetic Analyses
CalcRange Calculate the Extent of Occurrence
CoExClass Species Coexistence Matrices in Given Areas.
countryref Country Centroids and Country Capitals
GeoClean Automated Cleaning of Geographic Coordinates
GetElevation Elevation Data for Multiple Species
lemurs Distribution of Lemur Species
lemurs_in Example for an spgeoIN Object
lemurs_test Distribution of Lemur Species with Problematic Records
MapGrid Plotting Rasters in the Geographical Context
MapRichness Plotting Species Richness in a Set of Polygons
mdg_biomes WWF Biomes of Madagascar
mdg_poly WWF Biomes of Madagascar in Table Format
plot.spgeoIN Plot Method for SpgeoIN Objects
plot.spgeoOUT Plot Method for SpgeoOUT Objects
PlotHull Plotting Species Ranges
RangeRichness Species Richness Raster from Range Polygons
ReadPoints Loading Data into SpeciesgeocodeR
RichnessGrid Species Richness and Abundance Grids from Point Records
SpeciesGeoCoder A Complete SpeciesgeocodeR Analysis
speciesgeocodeR Prepare Species Distributions for the Use in Phylogenetic Analyses
Spgc2BioGeoBEARS Geography Input for BioGeoBEARS
SpGeoCod Point to Polygon Classification from Text Files
SpGeoCodH A Standard a SpeciesgeocodeR Area Classification
summary.spgeoIN Summary Method for SpgeoIN
summary.spgeoOUT Summary Method for SpgeoOUT
WriteOut Write SpeciesgeocodeR results to the Working Directory
WwfLoad Load the WWF Terrestrial Ecoregions