box_data |
Box data for box_plot, include Value, Level1 and Level2 columns. |
box_plot |
Box plot support two levels and multiple groups with P value. |
chord_data |
Chord data as example data for the chord_plot function. |
chord_plot |
Chord plot for visualizing the relationships of pathways and genes. |
circos_heatmap |
Circos heatmap plot for visualizing gene expressing in multiple samples. |
circos_heatmap_data |
Gene expression as example data for circos_heatmap function. |
corr_heatmap |
Correlation Heatmap for samples/groups based on Pearson algorithm. |
deg_data |
Differentially expressed genes (DEGs) for volcano_plot function. |
deg_data2 |
Differentially expressed genes (DEGs) for ma_plot function. |
dendro_plot |
Dendrograms for multiple samples/groups clustering. |
flower_plot |
Flower plot for stat common and unique gene among multiple sets. |
gene_cluster_data |
Gene cluster data for gene_cluster_trend function. |
gene_cluster_trend |
Gene cluster trend plot for visualizing gene expression trend profile in multiple samples. |
gene_exp |
Gene Expression dataframe of RNA-Seq. |
gene_exp2 |
Gene Expression dataframe of RNA-Seq. |
gene_rank_plot |
Gene ranking dotplot for visualizing differentailly expressed genes. |
go_anno |
GO annotation (BP, CC, MF) of genes as template data. |
go_deg_fc |
GO deg (differentially expressed genes) and fc (fold change) template data. |
go_enrich |
GO enrichment analysis based on GO annotation results (None/Exist Reference Genome). |
go_enrich_bar |
GO enrichment analysis and bar plot (None/Exist Reference Genome). |
go_enrich_dot |
GO enrichment analysis and dot plot (None/Exist Reference Genome). |
go_enrich_net |
GO enrichment analysis and net plot (None/Exist Reference Genome). |
go_enrich_stat |
GO enrichment analysis and stat plot (None/Exist Reference Genome). |
heatmap_cluster |
Heatmap cluster for visualizing clustered gene expression data. |
heatmap_group |
Heatmap group for visualizing grouped gene expression data. |
heatmap_group_data |
Heatmap group data for heatmap_group function. |
kegg_anno |
KEGG annotation (kegg_pathway) of genes as template data. |
kegg_deg_fc |
KEGG deg (differentially expressed genes) and fc (fold change) template data. |
kegg_enrich |
KEGG enrichment analysis based on KEGG annotation results (None/Exist Reference Genome). |
kegg_enrich_bar |
KEGG enrichment analysis and bar plot (None/Exist Reference Genome). |
kegg_enrich_dot |
KEGG enrichment analysis and dot plot (None/Exist Reference Genome). |
kegg_enrich_net |
KEGG enrichment analysis and net plot (None/Exist Reference Genome). |
ma_plot |
MversusA plot for visualizing differentially expressed genes. |
network_data |
Network data as example for network_plot function. |
network_plot |
Network plot for analyzing and visualizing relationship of genes. |
pca_group_sample |
PCA data2 include groups and samples. |
pca_plot |
PCA dimensional reduction visualization for RNA-Seq. |
pca_sample_gene |
PCA data1 include samples and genes. |
quantile_data |
Quantile data for quantile_plot example. |
quantile_plot |
Quantile plot for visualizing data distribution. |
survival_data |
Survival data as example data for survival_plot function. |
survival_plot |
Survival plot for analyzing and visualizing survival data. |
table_cross |
Table cross used to cross search and merge results in two tables. |
table_cross_data1 |
Table cross data1 for table_cross function. |
table_cross_data2 |
Table cross data2 for table_cross function. |
table_filter |
Table filter used to filter row by column condition. |
table_filter_data |
Table filter data as example for table_filter function. |
table_merge |
Table merge used to merge multiple variables to on variable. |
table_merge_data |
Table merge data as example for table_merge function. |
table_split |
Table split used for splitting a grouped column to multiple columns. |
table_split_data |
Table split data as example for table_split function. |
trend_data |
Trend data include genes expression in multiple traits as example for trend_plot function. |
trend_plot |
Trend plot for visualizing gene expression trend profile in multiple traits. |
tsne_data |
TSNE data as example for tsne_plot function. |
tsne_plot |
TSNE plot for analyzing and visualizing TSNE algorithm. |
venn_data |
Venn data with multiple gene sets. |
venn_plot |
Venn plot for stat common and unique gene among multiple sets. |
violin_plot |
Violin plot support two levels and multiple groups with P value. |
volcano_plot |
Volcano plot for visualizing differentailly expressed genes. |
wgcna_gene_exp |
WGCNA gene expression data for wgcna_analysis. |
wgcna_pipeline |
WGCNA analysis pipeline for RNA-Seq. |
wgcna_sample_group |
WGCNA samples groups data for wgcna_analysis. |