ef5a423b809a7f49fcfa28f74b4fc0b7 *DESCRIPTION
5c203835e235c3d7a192884f990d2b53 *NAMESPACE
009c8e25bd073a9e36cd053665af480e *NEWS.md
f323a122d441f13c02a8fbe6fbbc9cb0 *R/RcppExports.R
89e58f2910e1c86eab4d223ec5ae1758 *R/SNPkit-package.R
cca0a51991caa5d9ac0854b8bfa0be53 *R/admixture.R
b3506f1909d19a7af8166c37c3b85228 *R/build_fimpute_runner.R
118e28d8575959c579486fb8e4f8475a *R/classes.R
32c78d0945cfd76d8ad32010beb8ebe3 *R/combine.R
94b018d0e990c5c446096c8f77b6739b *R/fimpute_runner.R
cf90dec8e97230617173f5c0021e0586 *R/getGeno.R
3860ccbcc8958d1ca4c5e01004e6534a *R/import_batch.R
dc94dbdb97d852add7ae0ce971aa5392 *R/mat2SnpMatrix.R
211c86b00201f690c53fff3ebb16d1f3 *R/qcSNPs.R
28a52061a1746d7ef3ca2505ff692f07 *R/qcSamples.R
b6fd68afbb4c09fcbca2315ca2216693 *R/readFimpute.R
3ed380cb49c27e92f0c70e11d2adb3ad *R/save_fimpute.R
71b09c2cb34a60f0641550b54c0c82ac *R/save_plink.R
f56bc6807393e4fe1f5f87b77e6bd1ba *R/summary.R
c8fe7d91776c6cebae8640bfe6f5a050 *R/utils_anticlustering.R
11837fa16414ba05644f7ee07c623c7b *R/utils_display.R
5ec20106c2028df1cd67932939d178a7 *R/utils_fQC.R
37e5195bff724f699106d9926da3967e *R/utils_geno.R
0fa36c37e6fbb3953cb0ddf8ab2b2f39 *README.md
a5fa006de75dce73b97a5ed60168b338 *build/vignette.rds
f7aed632432ef79f4077c315706d5b8f *inst/CITATION
85b60f597473b4b36770eb305bed7549 *inst/doc/Introduction.R
cfab0abdc488e255928d9ce6ba49dbc4 *inst/doc/Introduction.Rmd
1689d92ef4b1d5291865372768e27a48 *inst/doc/Introduction.html
ef66a2654370e6b0db8b645fa9c22344 *man/FImputeExport-class.Rd
8f2535b7a18db785517b2a488a34408b *man/FImputeRunner-class.Rd
af1a0877b33a8f9c9169dc0068689739 *man/FImputeRunner.Rd
d914441a4d2622d9dc524f4c9c2e24bc *man/SNPFileConfig-class.Rd
faffc1fc1af19232862dfc09c7066202 *man/SNPImportList-class.Rd
6577dbdcf8fdeca34c15addfdbc6d41a *man/SNPkit.Rd
e671ed2ed16862cff23679fb81defc3a *man/Subset.Rd
cd7f64517b617f59983246c9c84b7fb7 *man/as_snpmatrix.Rd
b569e19750a9844c689e9b2bca9ec095 *man/check.call.rate.Rd
c1ac479904a3fd953aeb893cd79d4ec2 *man/check.ibs.Rd
e987e3802402a95ad7956f5dc473b372 *man/check.identical.samples.Rd
466b1896b22a9a2c6ca958f2d8a6f575 *man/check.identical.samples.by.block.Rd
37550a6216bbbb68749c5bb29d18f528 *man/check.mendelian.inconsistencies.Rd
0b774a94553a39bb4e56da477a772f5c *man/check.mendelian.inconsistencies.pair.Rd
db4550e69bb963029ec9357efbe1ec42 *man/check.sample.call.rate.Rd
b86d4e84647bb2e1b4025af2262eee31 *man/check.sample.heterozygosity.Rd
d448d59cb54bb493f908ebee197bdb9f *man/check.snp.chromo.Rd
5aaa50f60f03981c2503212eafaf99f5 *man/check.snp.hwe.Rd
f8c9daca1f170740b582965a8f8e44ff *man/check.snp.hwe.chi2.Rd
6abe9ac239670f503dac24b398f4b506 *man/check.snp.maf.Rd
364f83efd9beb016182b7cd28d36a177 *man/check.snp.mgf.Rd
613c4d75e13231cc69e76f4fb344ed82 *man/check.snp.monomorf.Rd
dfcff26b5778a0c520c7ce28f8f8ab1d *man/check.snp.no.position.Rd
1c59ed443c89afe0499ecf77a5feb9ae *man/check.snp.same.position.Rd
56a1ed250238954dbc7a6df38a23aa8d *man/combineSNPData.Rd
a7cfa4f687905d14ba8da7231a385c73 *man/doPCA.Rd
b773390312d4bebdb7f7f2e85a20c1bf *man/exploratory.plots.Rd
a189c0e583e31bb9874e26cda331e884 *man/genoToDF.Rd
ecdc6b0253caf77437b4f866b23a5304 *man/get.correl.fc.Rd
49924410fa3241d7397b358f81952050 *man/get.gender.Rd
021044247a777f0fe77f2df474f92309 *man/get.hwe.chi2.Rd
20de24a07b19ee3d0c49d19673e544d5 *man/getGeno.Rd
f5e7799cba72495a5262fc98e62e0ead *man/ibs.pair.Rd
0da22d42cb5d1a909b300749ffbe8509 *man/importAllGenos.Rd
a46de9a0d688a704d4ecddbc32d2c90a *man/importFImputeResults.Rd
ac38a78e0f61b1cda31aa2a6d2fa7f7c *man/import_geno_list.Rd
909f64c514ff42f2d81ae835e963c919 *man/pairs2sets.Rd
d4ae3a66955f6fb7368e67a2d5b3df33 *man/plotPCAgroups.Rd
d7e799e43df88667e4117608a79a8ab9 *man/print.summary.SNPDataLong.Rd
156e135ae7c91c56cde4b041ecfcdb85 *man/qcSNPs.Rd
c7c5c756828be6c20140e4936a44cd88 *man/qcSamples.Rd
def8316d7df096028537f640f271d80d *man/qc_header.Rd
e504b8b8fba726cfe6607b98b43dd7c7 *man/read.fimpute.Rd
a3105d8dce4fca84a62fa332711c8241 *man/runAnticlusteringPCA.Rd
d174fa2054e5c1226e804e0559fc0828 *man/runFImpute.Rd
1401b1d7d97eb7331c85f06a739ff6e4 *man/runPCA.Rd
a8aa5744a35ad92a077b1047c7de3586 *man/run_admixture.Rd
97b9955fd070146e24501e45dc42e73c *man/saveFImpute.Rd
5f820a3522b0f1016a6588aae5b4842f *man/saveFImputeRaw.Rd
2f8e7715e3d45064cf5a3df6d37a04f8 *man/savePlink.Rd
5555f213ef7c94572c6a4e46f08ee6f5 *man/summary-SNPDataLong-method.Rd
bb60d50f206efca2f106d1cf3f361ab6 *src/RcppExports.cpp
b1d6109186ed46d6132f348504e104b6 *src/fimpute_cpp.cpp
81e2b982c0a79e25462f5070cdf621c1 *src/read_fimpute.cpp
f10ad8ddb191f6bec8dcfeae85f0f47a *tests/testthat.R
8cdca31847d8fb67fb48e752a5b95ce3 *tests/testthat/helper-combine.R
6bad44ec989e840b52dd84e1bca53de7 *tests/testthat/test-admixture-rename.R
52a3cd7166b9da1871ae7095e1512def *tests/testthat/test-as_snpmatrix.R
b3cc69f7db602e1f98fd80928ac69e21 *tests/testthat/test-combine-equivalence.R
3b3e47ff68410eb16c7190f796fb65a3 *tests/testthat/test-fqc-checks.R
32f79ba9db111c59056afc4884f58529 *tests/testthat/test-rbind-lowlevel.R
cfab0abdc488e255928d9ce6ba49dbc4 *vignettes/Introduction.Rmd
