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CRAN Package Check Results for Package casebase

Last updated on 2026-08-03 23:50:28 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.10.6 13.04 287.18 300.22 ERROR
r-devel-linux-x86_64-debian-gcc 0.10.6 9.07 207.33 216.40 ERROR
r-devel-linux-x86_64-fedora-clang 0.10.6 12.00 251.89 263.89 ERROR
r-devel-linux-x86_64-fedora-gcc 0.10.6 9.00 194.43 203.43 ERROR
r-devel-windows-x86_64 0.10.6 15.00 258.00 273.00 ERROR
r-patched-linux-x86_64 0.10.6 13.57 271.61 285.18 ERROR
r-release-linux-x86_64 0.10.6 12.64 275.59 288.23 ERROR
r-release-macos-arm64 0.10.6 3.00 80.00 83.00 OK
r-release-macos-x86_64 0.10.6 10.00 357.00 367.00 OK
r-release-windows-x86_64 0.10.6 15.00 257.00 272.00 ERROR
r-oldrel-macos-arm64 0.10.6 OK
r-oldrel-macos-x86_64 0.10.6 8.00 304.00 312.00 OK
r-oldrel-windows-x86_64 0.10.6 20.00 376.00 396.00 ERROR

Additional issues

M1mac

Check Details

Version: 0.10.6
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘competingRisk.Rmd’ using rmarkdown --- finished re-building ‘competingRisk.Rmd’ --- re-building ‘customizingpopTime.Rmd’ using rmarkdown --- finished re-building ‘customizingpopTime.Rmd’ --- re-building ‘plotabsRisk.Rmd’ using rmarkdown --- finished re-building ‘plotabsRisk.Rmd’ --- re-building ‘plotsmoothHazard.Rmd’ using rmarkdown Quitting from plotsmoothHazard.Rmd:68-81 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_dots_nonempty> Error in `plot()`: ! `...` must be empty. ✖ Problematic arguments: • print.cond = TRUE • main = "No Hormonal Therapy Hazard Function" --- Backtrace: ▆ 1. ├─base::plot(...) 2. └─casebase:::plot.singleEventCB(...) 3. ├─base::do.call(...) 4. └─visreg (local) `<fn>`(...) 5. └─visreg:::finalize_visreg(v, plot, ...) 6. ├─base::plot(v, ...) 7. └─visreg:::plot.visreg(v, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'plotsmoothHazard.Rmd' failed with diagnostics: `...` must be empty. ✖ Problematic arguments: • print.cond = TRUE • main = "No Hormonal Therapy Hazard Function" --- failed re-building ‘plotsmoothHazard.Rmd’ --- re-building ‘popTime.Rmd’ using rmarkdown --- finished re-building ‘popTime.Rmd’ --- re-building ‘smoothHazard.Rmd’ using rmarkdown Quitting from smoothHazard.Rmd:121-125 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_dots_nonempty> Error in `FUN()`: ! `...` must be empty. ✖ Problematic argument: • print.cond = TRUE --- Backtrace: ▆ 1. ├─base::plot(model4, hazard.params = list(alpha = 0.05)) 2. └─casebase:::plot.singleEventCB(model4, hazard.params = list(alpha = 0.05)) 3. ├─base::do.call(...) 4. └─visreg (local) `<fn>`(...) 5. └─visreg:::finalize_visreg(v, plot, ...) 6. ├─base::plot(v, ...) 7. └─visreg:::plot.visreg_list(v, ...) 8. ├─base::structure(...) 9. └─base::lapply(x, plot, ...) 10. ├─base (local) FUN(X[[i]], ...) 11. └─visreg:::plot.visreg(X[[i]], ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'smoothHazard.Rmd' failed with diagnostics: `...` must be empty. ✖ Problematic argument: • print.cond = TRUE --- failed re-building ‘smoothHazard.Rmd’ --- re-building ‘time-varying-covariates.Rmd’ using rmarkdown --- finished re-building ‘time-varying-covariates.Rmd’ SUMMARY: processing the following files failed: ‘plotsmoothHazard.Rmd’ ‘smoothHazard.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.10.6
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0IitAo’ ‘~/tmp/scratch/Rtmp0atJpG’ ‘~/tmp/scratch/Rtmp0f9BHP’ ‘~/tmp/scratch/Rtmp0x8Ohk’ ‘~/tmp/scratch/Rtmp13b2rd’ ‘~/tmp/scratch/Rtmp1Lf2C9’ ‘~/tmp/scratch/Rtmp23lbqs’ ‘~/tmp/scratch/Rtmp2YsTrF’ ‘~/tmp/scratch/Rtmp2qgXQL’ ‘~/tmp/scratch/Rtmp3LpKNQ’ ‘~/tmp/scratch/Rtmp3OnjZz’ ‘~/tmp/scratch/Rtmp3RHZ9f’ ‘~/tmp/scratch/Rtmp3nxbIm’ ‘~/tmp/scratch/Rtmp47ggm9’ ‘~/tmp/scratch/Rtmp4uUmTi’ ‘~/tmp/scratch/Rtmp5R1aNP’ ‘~/tmp/scratch/Rtmp5ZCnHg’ ‘~/tmp/scratch/Rtmp5j8PbQ’ ‘~/tmp/scratch/Rtmp6ADfbb’ ‘~/tmp/scratch/Rtmp6V7yUo’ ‘~/tmp/scratch/Rtmp74sN4p’ ‘~/tmp/scratch/Rtmp77VgDe’ ‘~/tmp/scratch/Rtmp7RyZ6p’ ‘~/tmp/scratch/Rtmp7XUyBQ’ ‘~/tmp/scratch/Rtmp7p543a’ ‘~/tmp/scratch/Rtmp8JgObs’ ‘~/tmp/scratch/Rtmp8cXNA2’ ‘~/tmp/scratch/Rtmp8kSPiW’ ‘~/tmp/scratch/Rtmp963mjC’ ‘~/tmp/scratch/Rtmp9mx2yu’ ‘~/tmp/scratch/RtmpAMzzzV’ ‘~/tmp/scratch/RtmpAPY9RG’ ‘~/tmp/scratch/RtmpB7D83W’ ‘~/tmp/scratch/RtmpC12kd0’ ‘~/tmp/scratch/RtmpC9pNj9’ ‘~/tmp/scratch/RtmpCG2nOk’ ‘~/tmp/scratch/RtmpCc6REW’ ‘~/tmp/scratch/RtmpDeAKy7’ ‘~/tmp/scratch/RtmpDfVWjz’ ‘~/tmp/scratch/RtmpEXwG89’ ‘~/tmp/scratch/RtmpEpzkl4’ ‘~/tmp/scratch/RtmpEyJSFv’ ‘~/tmp/scratch/RtmpFDn9bQ’ ‘~/tmp/scratch/RtmpFZhAGD’ ‘~/tmp/scratch/RtmpFeNOvA’ ‘~/tmp/scratch/RtmpFopFWx’ ‘~/tmp/scratch/RtmpHgRmdy’ ‘~/tmp/scratch/RtmpHiwWD6’ ‘~/tmp/scratch/RtmpHjyD1d’ ‘~/tmp/scratch/RtmpHlGcTb’ ‘~/tmp/scratch/RtmpIJ2K83’ ‘~/tmp/scratch/RtmpIvXQt8’ ‘~/tmp/scratch/RtmpJCEC5N’ ‘~/tmp/scratch/RtmpJLresM’ ‘~/tmp/scratch/RtmpJREpUW’ ‘~/tmp/scratch/RtmpJlBheW’ ‘~/tmp/scratch/RtmpKMrxYz’ ‘~/tmp/scratch/RtmpKQCHl4’ ‘~/tmp/scratch/RtmpKxmrJV’ ‘~/tmp/scratch/RtmpL1laqX’ ‘~/tmp/scratch/RtmpLpxdV5’ ‘~/tmp/scratch/RtmpLr18it’ ‘~/tmp/scratch/RtmpMPCbHP’ ‘~/tmp/scratch/RtmpMpRb1z’ ‘~/tmp/scratch/RtmpN3z53R’ ‘~/tmp/scratch/RtmpNJJqnG’ ‘~/tmp/scratch/RtmpNLVOXD’ ‘~/tmp/scratch/RtmpNlZNZW’ ‘~/tmp/scratch/RtmpO4ChK9’ ‘~/tmp/scratch/RtmpPpfFbZ’ ‘~/tmp/scratch/RtmpQw86lq’ ‘~/tmp/scratch/RtmpRIfG7s’ ‘~/tmp/scratch/RtmpRPD8Sf’ ‘~/tmp/scratch/RtmpRRv6Od’ ‘~/tmp/scratch/RtmpRXu6ad’ ‘~/tmp/scratch/RtmpRnsVg5’ ‘~/tmp/scratch/RtmpRpSscW’ ‘~/tmp/scratch/RtmpS9OxY2’ ‘~/tmp/scratch/RtmpSCwvSt’ ‘~/tmp/scratch/RtmpSOTr5e’ ‘~/tmp/scratch/RtmpSTDlFk’ ‘~/tmp/scratch/RtmpTHyFRj’ ‘~/tmp/scratch/RtmpUOXfyR’ ‘~/tmp/scratch/RtmpVFW0Kt’ ‘~/tmp/scratch/RtmpVYcgj9’ ‘~/tmp/scratch/RtmpWcsxsy’ ‘~/tmp/scratch/RtmpWghFmo’ ‘~/tmp/scratch/RtmpXWFT6o’ ‘~/tmp/scratch/RtmpXlZqcy’ ‘~/tmp/scratch/RtmpXs6IBa’ ‘~/tmp/scratch/RtmpY90zUE’ ‘~/tmp/scratch/RtmpYUgWvG’ ‘~/tmp/scratch/RtmpYdVrid’ ‘~/tmp/scratch/RtmpYzStjp’ ‘~/tmp/scratch/RtmpZQ2qMn’ ‘~/tmp/scratch/RtmpZVYSf1’ ‘~/tmp/scratch/RtmparysqW’ ‘~/tmp/scratch/Rtmpb9DVtN’ ‘~/tmp/scratch/RtmpbiIsO0’ ‘~/tmp/scratch/RtmpcT9RgZ’ ‘~/tmp/scratch/RtmpcvnVr9’ ‘~/tmp/scratch/Rtmpd8b1YE’ ‘~/tmp/scratch/RtmpdO3n0G’ ‘~/tmp/scratch/Rtmpg8v3i0’ ‘~/tmp/scratch/RtmpgMyHt7’ ‘~/tmp/scratch/Rtmpgm6v62’ ‘~/tmp/scratch/RtmphMSeJB’ ‘~/tmp/scratch/RtmphwZt7C’ ‘~/tmp/scratch/RtmpiOun4u’ ‘~/tmp/scratch/RtmpiwgSXs’ ‘~/tmp/scratch/Rtmpj0u2Ih’ ‘~/tmp/scratch/Rtmpj96dZg’ ‘~/tmp/scratch/RtmpjMgb4Q’ ‘~/tmp/scratch/RtmpjNdgUp’ ‘~/tmp/scratch/Rtmpjkj9aW’ ‘~/tmp/scratch/Rtmpjnrcue’ ‘~/tmp/scratch/Rtmpjuu5l6’ ‘~/tmp/scratch/RtmpkRQSjm’ ‘~/tmp/scratch/RtmpkSGvqm’ ‘~/tmp/scratch/RtmplUULu4’ ‘~/tmp/scratch/RtmplgW4kb’ ‘~/tmp/scratch/Rtmpm7OliF’ ‘~/tmp/scratch/RtmpmkXjMy’ ‘~/tmp/scratch/RtmpnoTXer’ ‘~/tmp/scratch/Rtmpnof4H4’ ‘~/tmp/scratch/RtmpnpLEpN’ ‘~/tmp/scratch/RtmpoRUIPT’ ‘~/tmp/scratch/RtmpoWa1RB’ ‘~/tmp/scratch/RtmpoqxsC8’ ‘~/tmp/scratch/RtmpotT7CY’ ‘~/tmp/scratch/RtmppQmohc’ ‘~/tmp/scratch/Rtmppn0028’ ‘~/tmp/scratch/Rtmpq3ZHLB’ ‘~/tmp/scratch/RtmpqAjSSP’ ‘~/tmp/scratch/RtmpqCyCqJ’ ‘~/tmp/scratch/RtmpqFYlL3’ ‘~/tmp/scratch/Rtmpqh9K0j’ ‘~/tmp/scratch/Rtmpqw94lq’ ‘~/tmp/scratch/RtmprRXYZ1’ ‘~/tmp/scratch/Rtmprc3HZs’ ‘~/tmp/scratch/RtmprlD4Bd’ ‘~/tmp/scratch/RtmpsnIRBh’ ‘~/tmp/scratch/RtmptG3sV1’ ‘~/tmp/scratch/RtmptJa0ZR’ ‘~/tmp/scratch/Rtmpu67v58’ ‘~/tmp/scratch/Rtmpu7dVU1’ ‘~/tmp/scratch/RtmpvJn8Bo’ ‘~/tmp/scratch/RtmpwTuW0g’ ‘~/tmp/scratch/RtmpxGf4CM’ ‘~/tmp/scratch/RtmpxIz3qU’ ‘~/tmp/scratch/RtmpxMz90h’ ‘~/tmp/scratch/RtmpyKNNrr’ ‘~/tmp/scratch/RtmpyuV6Ow’ ‘~/tmp/scratch/Rtmpz73mY0’ ‘~/tmp/scratch/RtmpzBeUvU’ ‘~/tmp/scratch/RtmpzVsn84’ ‘~/tmp/scratch/Rtmpzh7SZk’ ‘~/tmp/scratch/Rtmpzxm5ne’ ‘~/tmp/scratch/ccyLUiak.s’ ‘~/tmp/scratch/xvfb-run.0LivIT’ ‘~/tmp/scratch/xvfb-run.0V2Glq’ ‘~/tmp/scratch/xvfb-run.0pIDGR’ ‘~/tmp/scratch/xvfb-run.1HbcQV’ ‘~/tmp/scratch/xvfb-run.3lMaEO’ ‘~/tmp/scratch/xvfb-run.43lp9e’ ‘~/tmp/scratch/xvfb-run.4j6X0F’ ‘~/tmp/scratch/xvfb-run.5U1K5B’ ‘~/tmp/scratch/xvfb-run.5mX3DV’ ‘~/tmp/scratch/xvfb-run.7I1ZpA’ ‘~/tmp/scratch/xvfb-run.8U7pDX’ ‘~/tmp/scratch/xvfb-run.8pfATA’ ‘~/tmp/scratch/xvfb-run.8s04z8’ ‘~/tmp/scratch/xvfb-run.BpV8gh’ ‘~/tmp/scratch/xvfb-run.BqPLw1’ ‘~/tmp/scratch/xvfb-run.CFJZgK’ ‘~/tmp/scratch/xvfb-run.DiGYzf’ ‘~/tmp/scratch/xvfb-run.EwCSsQ’ ‘~/tmp/scratch/xvfb-run.Ezrxx6’ ‘~/tmp/scratch/xvfb-run.FeiSik’ ‘~/tmp/scratch/xvfb-run.G0kkxg’ ‘~/tmp/scratch/xvfb-run.HQe9xt’ ‘~/tmp/scratch/xvfb-run.JGrZo7’ ‘~/tmp/scratch/xvfb-run.JPy8xB’ ‘~/tmp/scratch/xvfb-run.LAs8kl’ ‘~/tmp/scratch/xvfb-run.MwLp99’ ‘~/tmp/scratch/xvfb-run.N6AY0m’ ‘~/tmp/scratch/xvfb-run.Nbx1El’ ‘~/tmp/scratch/xvfb-run.Q5vRLS’ ‘~/tmp/scratch/xvfb-run.R1UU1u’ ‘~/tmp/scratch/xvfb-run.Sa9Tlz’ ‘~/tmp/scratch/xvfb-run.Su3lAk’ ‘~/tmp/scratch/xvfb-run.WyxBnb’ ‘~/tmp/scratch/xvfb-run.X3aRfT’ ‘~/tmp/scratch/xvfb-run.XUNM9I’ ‘~/tmp/scratch/xvfb-run.YUqiyX’ ‘~/tmp/scratch/xvfb-run.YczflZ’ ‘~/tmp/scratch/xvfb-run.YhJMXm’ ‘~/tmp/scratch/xvfb-run.ZB5OXR’ ‘~/tmp/scratch/xvfb-run.ZsvDfB’ ‘~/tmp/scratch/xvfb-run.b7xvY2’ ‘~/tmp/scratch/xvfb-run.cYE8nZ’ ‘~/tmp/scratch/xvfb-run.caJOAu’ ‘~/tmp/scratch/xvfb-run.clIxYO’ ‘~/tmp/scratch/xvfb-run.eVsy7Y’ ‘~/tmp/scratch/xvfb-run.gmtH9p’ ‘~/tmp/scratch/xvfb-run.h6ULHN’ ‘~/tmp/scratch/xvfb-run.hWfo5Z’ ‘~/tmp/scratch/xvfb-run.i79P6P’ ‘~/tmp/scratch/xvfb-run.j6s4lP’ ‘~/tmp/scratch/xvfb-run.jAGPLc’ ‘~/tmp/scratch/xvfb-run.jJCqBT’ ‘~/tmp/scratch/xvfb-run.kyZji6’ ‘~/tmp/scratch/xvfb-run.lXJtB3’ ‘~/tmp/scratch/xvfb-run.p20CVN’ ‘~/tmp/scratch/xvfb-run.plmk8O’ ‘~/tmp/scratch/xvfb-run.qudifL’ ‘~/tmp/scratch/xvfb-run.rkHmz2’ ‘~/tmp/scratch/xvfb-run.srhFzZ’ ‘~/tmp/scratch/xvfb-run.tMWi1b’ ‘~/tmp/scratch/xvfb-run.twQsEy’ ‘~/tmp/scratch/xvfb-run.urrY93’ ‘~/tmp/scratch/xvfb-run.uuHul5’ ‘~/tmp/scratch/xvfb-run.wSrNMQ’ ‘~/tmp/scratch/xvfb-run.xFAv68’ ‘~/tmp/scratch/xvfb-run.z5zQPv’ ‘~/tmp/scratch/xvfb-run.z8FugE’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.10.6
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘competingRisk.Rmd’ using rmarkdown --- finished re-building ‘competingRisk.Rmd’ --- re-building ‘customizingpopTime.Rmd’ using rmarkdown --- finished re-building ‘customizingpopTime.Rmd’ --- re-building ‘plotabsRisk.Rmd’ using rmarkdown --- finished re-building ‘plotabsRisk.Rmd’ --- re-building ‘plotsmoothHazard.Rmd’ using rmarkdown Quitting from plotsmoothHazard.Rmd:68-81 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_dots_nonempty> Error in `plot()`: ! `...` must be empty. ✖ Problematic arguments: • print.cond = TRUE • main = "No Hormonal Therapy Hazard Function" --- Backtrace: ▆ 1. ├─base::plot(...) 2. └─casebase:::plot.singleEventCB(...) 3. ├─base::do.call(...) 4. └─visreg (local) `<fn>`(...) 5. └─visreg:::finalize_visreg(v, plot, ...) 6. ├─base::plot(v, ...) 7. └─visreg:::plot.visreg(v, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'plotsmoothHazard.Rmd' failed with diagnostics: `...` must be empty. ✖ Problematic arguments: • print.cond = TRUE • main = "No Hormonal Therapy Hazard Function" --- failed re-building ‘plotsmoothHazard.Rmd’ --- re-building ‘popTime.Rmd’ using rmarkdown --- finished re-building ‘popTime.Rmd’ --- re-building ‘smoothHazard.Rmd’ using rmarkdown Quitting from smoothHazard.Rmd:121-125 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_dots_nonempty> Error in `FUN()`: ! `...` must be empty. ✖ Problematic argument: • print.cond = TRUE --- Backtrace: ▆ 1. ├─base::plot(model4, hazard.params = list(alpha = 0.05)) 2. └─casebase:::plot.singleEventCB(model4, hazard.params = list(alpha = 0.05)) 3. ├─base::do.call(...) 4. └─visreg (local) `<fn>`(...) 5. └─visreg:::finalize_visreg(v, plot, ...) 6. ├─base::plot(v, ...) 7. └─visreg:::plot.visreg_list(v, ...) 8. ├─base::structure(...) 9. └─base::lapply(x, plot, ...) 10. ├─base (local) FUN(X[[i]], ...) 11. └─visreg:::plot.visreg(X[[i]], ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'smoothHazard.Rmd' failed with diagnostics: `...` must be empty. ✖ Problematic argument: • print.cond = TRUE --- failed re-building ‘smoothHazard.Rmd’ --- re-building ‘time-varying-covariates.Rmd’ using rmarkdown --- finished re-building ‘time-varying-covariates.Rmd’ SUMMARY: processing the following files failed: ‘plotsmoothHazard.Rmd’ ‘smoothHazard.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 0.10.6
Check: tests
Result: ERROR Running ‘testthat.R’ [36s/39s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(casebase) See example usage at http://sahirbhatnagar.com/casebase/ > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > library(survival) > > test_check("casebase") Saving _problems/test-plotSingleEventCB-39.R [ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • GBM is not implemented (1): 'test-gbm.R:4:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plotSingleEventCB.R:39:5'): no error in plot method for singleEventCB objects - hazard function ── Expected `inherits(outglm, "try-error")` to be FALSE. Differences: `actual`: TRUE `expected`: FALSE [ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

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