CRAN Package Check Results for Package dartR.base

Last updated on 2026-05-16 18:53:39 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.2.3	49.07	405.03	454.10	OK
r-devel-linux-x86_64-debian-gcc	1.2.3	31.52	263.57	295.09	OK
r-devel-linux-x86_64-fedora-clang	1.2.3	84.00	638.85	722.85	OK
r-devel-linux-x86_64-fedora-gcc	1.2.3	84.00	632.84	716.84	OK
r-devel-windows-x86_64	1.2.3	51.00	427.00	478.00	OK
r-patched-linux-x86_64	1.2.3	50.36	390.43	440.79	OK
r-release-linux-x86_64	1.2.3	48.40	390.43	438.83	OK
r-release-macos-arm64	1.2.3	11.00	82.00	93.00	OK
r-release-macos-x86_64	1.2.3	33.00	361.00	394.00	OK
r-release-windows-x86_64	1.2.3	56.00	434.00	490.00	OK
r-oldrel-macos-arm64	1.2.3			11.00	ERROR
r-oldrel-macos-x86_64	1.2.3	33.00	278.00	311.00	ERROR
r-oldrel-windows-x86_64	1.2.3	73.00	577.00	650.00	OK

Check Details

Version: 1.2.3
Check: package dependencies
Result: ERROR Packages required but not available: 'SNPRelate', 'snpStats' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-arm64

Version: 1.2.3
Check: examples
Result: ERROR Running examples in ‘dartR.base-Ex.R’ failed The error most likely occurred in: > ### Name: gl.filter.ld > ### Title: Filters loci based on linkage disequilibrium (LD) > ### Aliases: gl.filter.ld > > ### ** Examples > > if ((requireNamespace("snpStats", quietly = TRUE)) & (requireNamespace("fields", quietly = TRUE))) { + test <- gl.filter.callrate(platypus.gl, threshold = 1) + test <- gl.filter.monomorphs(test) + report <- gl.report.ld.map(test) + res <- gl.filter.ld(x=test,ld.report = report) + } Starting gl.filter.callrate Processing genlight object with SNP data Warning: data include loci that are scored NA across all individuals. Consider filtering using gl <- gl.filter.allna(gl) Warning: Data may include monomorphic loci in call rate calculations for filtering Recalculating Call Rate Removing loci based on Call Rate, threshold = 1 Completed: gl.filter.callrate Starting gl.filter.monomorphs Processing genlight object with SNP data Identifying monomorphic loci Removing monomorphic loci and loci with all missing data Completed: gl.filter.monomorphs Starting gl.report.ld.map Processing genlight object with SNP data There is no information in the chromosome/position slot of the genlight object. Assigning the same chromosome ('1') to all the SNPs in the dataset. Assigning a sequence from 1 to n loci as the position of each SNP. Calculating LD for all possible SNP pair combinations Calculating pairwise LD in population SEVERN_ABOVE *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: snpStats::ld(genotype_loci, genotype_loci, stats = ld.stat) 2: gl.report.ld.map(test) An irrecoverable exception occurred. R is aborting now ... Flavor: r-oldrel-macos-x86_64