CRAN Package Check Results for Package lisat

Last updated on 2026-07-18 17:51:00 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.2	49.47	585.66	635.13	OK
r-devel-linux-x86_64-debian-gcc	0.1.2	38.06	420.19	458.25	OK
r-devel-linux-x86_64-fedora-clang	0.1.2	88.00	983.29	1071.29	OK
r-devel-linux-x86_64-fedora-gcc	0.1.2	39.00	415.84	454.84	OK
r-devel-windows-x86_64	0.1.2	48.00	474.00	522.00	OK
r-patched-linux-x86_64	0.1.2	46.42	559.28	605.70	OK
r-release-linux-x86_64	0.1.2	44.21	558.44	602.65	OK
r-release-macos-arm64	0.1.2	14.00	146.00	160.00	OK
r-release-macos-x86_64	0.1.2	34.00	562.00	596.00	OK
r-release-windows-x86_64	0.1.2	50.00	471.00	521.00	OK
r-oldrel-macos-arm64	0.1.2	14.00	96.00	110.00	ERROR
r-oldrel-macos-x86_64	0.1.2	36.00	575.00	611.00	ERROR
r-oldrel-windows-x86_64	0.1.2	66.00	652.00	718.00	OK

Check Details

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [4s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘lisat-intro.Rmd’ using rmarkdown Quitting from lisat-intro.Rmd:107-111 [cis_analysis] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.frame`: ! undefined columns selected --- Backtrace: ▆ 1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000) 2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")] 3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name")) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics: undefined columns selected --- failed re-building ‘lisat-intro.Rmd’ SUMMARY: processing the following file failed: ‘lisat-intro.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64