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CRAN Package Check Results for Package qtl2

Last updated on 2026-07-17 05:51:04 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.44 589.96 236.26 826.22 OK
r-devel-linux-x86_64-debian-gcc 0.44 437.27 175.68 612.95 NOTE
r-devel-linux-x86_64-fedora-clang 0.44 780.00 191.94 971.94 OK
r-devel-linux-x86_64-fedora-gcc 0.44 490.00 146.56 636.56 NOTE
r-devel-windows-x86_64 0.44 650.00 316.00 966.00 NOTE
r-patched-linux-x86_64 0.44 565.78 233.32 799.10 OK
r-release-linux-x86_64 0.44 587.43 232.05 819.48 OK
r-release-macos-arm64 0.44 118.00 -40.00 78.00 OK
r-release-macos-x86_64 0.44 330.00 19.00 349.00 OK
r-release-windows-x86_64 0.44 653.00 310.00 963.00 OK
r-oldrel-macos-arm64 0.44 89.00 -12.00 77.00 OK
r-oldrel-macos-x86_64 0.44 319.00 29.00 348.00 OK
r-oldrel-windows-x86_64 0.44 740.00 384.00 1124.00 OK

Check Details

Version: 0.44
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: qtl2/tests/testthat/test-calc_geno_freq.R (.Dim: 8, .Dimnames: 8, .Names: 2) qtl2/tests/testthat/test-calcerrorlod.R (.Dim: 5, .Dimnames: 5) qtl2/tests/testthat/test-compare_geno.R (.Dim: 3, .Dimnames: 3, .Names: 2) qtl2/tests/testthat/test-compare_maps.R (.Names: 1) qtl2/tests/testthat/test-control_files.R (.Names: 12) qtl2/tests/testthat/test-count_xo.R (.Dim: 2, .Dimnames: 2) qtl2/tests/testthat/test-create_gene_query_func.R (.Names: 1) qtl2/tests/testthat/test-create_variant_query_func.R (.Names: 1) qtl2/tests/testthat/test-est_herit.R (.Names: 1) qtl2/tests/testthat/test-find_index_snp.R (.Names: 1) qtl2/tests/testthat/test-find_peaks.R (.Label: 3, .Names: 3) qtl2/tests/testthat/test-io.R (.Names: 4) qtl2/tests/testthat/test-n_missing.R (.Names: 1) qtl2/tests/testthat/test-reduce_markers.R (.Names: 7) qtl2/tests/testthat/test-scan1_pg.R (.Dim: 2, .Dimnames: 2) qtl2/tests/testthat/test-scan1snps.R (.Dim: 1, .Dimnames: 1) qtl2/tests/testthat/test-simgeno.R (.Dim: 2, .Dimnames: 2) '.Dim' should be changed to 'dim'. '.Dimnames' should be changed to 'dimnames'. '.Names' should be changed to 'names'. '.Label' should be changed to 'levels'. Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc

Version: 0.44
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: qtl2/tests/testthat/test-calc_geno_freq.R (.Dim: 8, .Dimnames: 8, .Names: 2) qtl2/tests/testthat/test-calcerrorlod.R (.Dim: 5, .Dimnames: 5) qtl2/tests/testthat/test-compare_geno.R (.Dim: 3, .Dimnames: 3, .Names: 2) qtl2/tests/testthat/test-compare_maps.R (.Names: 1) qtl2/tests/testthat/test-control_files.R (.Names: 12) qtl2/tests/testthat/test-count_xo.R (.Dim: 2, .Dimnames: 2) qtl2/tests/testthat/test-create_gene_query_func.R (.Names: 1) qtl2/tests/testthat/test-create_variant_query_func.R (.Names: 1) qtl2/tests/testthat/test-est_herit.R (.Names: 1) qtl2/tests/testthat/test-find_index_snp.R (.Names: 1) qtl2/tests/testthat/test-find_peaks.R (.Label: 3, .Names: 3) qtl2/tests/testthat/test-io.R (.Names: 4) qtl2/tests/testthat/test-n_missing.R (.Names: 1) qtl2/tests/testthat/test-reduce_markers.R (.Names: 7) qtl2/tests/testthat/test-scan1_pg.R (.Dim: 2, .Dimnames: 2) qtl2/tests/testthat/test-scan1snps.R (.Dim: 1, .Dimnames: 1) qtl2/tests/testthat/test-simgeno.R (.Dim: 2, .Dimnames: 2) Flavor: r-devel-windows-x86_64

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