CRAN Package Check Results for Maintainer ‘Renjun Yang <rjyang at rcees.ac.cn>’

Last updated on 2026-01-17 09:50:37 CET.

Package	ERROR	OK
extractFAERS	1	12

Package extractFAERS

Current CRAN status: ERROR: 1, OK: 12

Version: 0.1.4
Check: examples
Result: ERROR Running examples in ‘extractFAERS-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: timetodayFAERS > ### Title: Change all time units to days in the data filtered by > ### filter_by_occu_FAERS(). This function converts age and time units in > ### the data to days, and processes occupation and reaction data. > ### Aliases: timetodayFAERS time_to_day_FAERS > > ### ** Examples > > # Example_1 Perform FAERS data preprocessing in one step and > # generate `F_COREDATA_1PS_PROF_STU.RData` in a temporary folder. > # In practice, it is recommended to set `usetempdir = FALSE` and specify `workingdir` > # to prevent the processed results in the temporary folder from being automatically deleted. > extract_FAERS_data( + workingdir = system.file("extdata", package = "extractFAERS"), + usetempdir = TRUE, + corenum = 2, + startfile = 1, + endfile = 4, + onlydoextract = FALSE, + occpextract = NULL + ) Found the following .zip files: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/extractFAERS/extdata/faers_ascii_2015q1_example.zip/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/extractFAERS/extdata/faers_ascii_2015q2_example.zip/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/extractFAERS/extdata/faers_ascii_2015q3_example.zip/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/extractFAERS/extdata/faers_ascii_2015q4_example.zip Extracting:faers_ascii_2015q1_example.zip Extracting:faers_ascii_2015q2_example.zip Extracting:faers_ascii_2015q3_example.zip Extracting:faers_ascii_2015q4_example.zip Extraction complete. All files are now in:/tmp/Rtmpf7DJnB Files have been organized. [1] "/tmp/Rtmpf7DJnB/INDEX1PS/" [1] "/tmp/Rtmpf7DJnB/DEMO1PS/" [1] "/tmp/Rtmpf7DJnB/INDI1PS/" [1] "/tmp/Rtmpf7DJnB/REAC1PS/" Extracting DRUG data, This may take minitues to hours Extracting /tmp/Rtmpf7DJnB/DEMO/ data, This may take minitues to hours Error in serverSocket(port = port) : creation of server socket failed: port 11246 cannot be opened Calls: extract_FAERS_data -> makeCluster -> makePSOCKcluster -> serverSocket Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed extract1PSFAERS 0.475 0.146 11.267 filterbyoccpFAERS 0.189 0.036 10.580 Flavor: r-devel-linux-x86_64-debian-gcc