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Last updated on 2026-07-16 18:49:51 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.23 | 3.55 | 141.00 | 144.55 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9.23 | 2.92 | 97.44 | 100.36 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.9.23 | 232.99 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.23 | 98.81 | OK | |||
| r-devel-windows-x86_64 | 0.9.23 | 5.00 | 190.00 | 195.00 | OK | |
| r-patched-linux-x86_64 | 0.9.23 | 4.45 | 137.83 | 142.28 | OK | |
| r-release-linux-x86_64 | 0.9.23 | 3.59 | 135.49 | 139.08 | OK | |
| r-release-macos-arm64 | 0.9.23 | 1.00 | 39.00 | 40.00 | OK | |
| r-release-macos-x86_64 | 0.9.23 | 3.00 | 233.00 | 236.00 | OK | |
| r-release-windows-x86_64 | 0.9.23 | 6.00 | 181.00 | 187.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.9.23 | OK | ||||
| r-oldrel-macos-x86_64 | 0.9.23 | 3.00 | 189.00 | 192.00 | OK | |
| r-oldrel-windows-x86_64 | 0.9.23 | 7.00 | 218.00 | 225.00 | ERROR |
Version: 0.9.23
Check: examples
Result: ERROR
Running examples in 'rptR-Ex.R' failed
The error most likely occurred in:
> ### Name: rptProportion
> ### Title: GLMM-based Repeatability Estimation for Proportion Data
> ### Aliases: rptProportion
>
> ### ** Examples
>
> data(BeetlesMale)
>
> # prepare proportion data
> BeetlesMale$Dark <- BeetlesMale$Colour
> BeetlesMale$Reddish <- (BeetlesMale$Colour-1)*-1
> BeetlesColour <- aggregate(cbind(Dark, Reddish) ~ Treatment + Population + Container,
+ data=BeetlesMale, FUN=sum)
>
> # Note: nboot and npermut are set to 0 for speed reasons.
>
> # repeatability with one grouping level
> rptProportion(cbind(Dark, Reddish) ~ (1|Population),
+ grname=c("Population"), data=BeetlesColour, nboot=3, npermut=3)
Bootstrap Progress:
Error: Downdated VtV is not positive definite
Execution halted
Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.9.23
Check: tests
Result: ERROR
Running 'testthat.R' [95s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(rptR)
>
> test_check("rptR")
Bootstrap Progress:
Bootstrap Progress:
Permutation Progress for Population :
Bootstrap Progress:
Permutation Progress for Container:
Bootstrap Progress:
Permutation Progress for Population:
Bootstrap Progress:
Permutation Progress for Population:
Bootstrap Progress:
Permutation Progress for Population:
Bootstrap Progress:
Permutation Progress for Container:
Permutation Progress for Population:
Bootstrap Progress:
Permutation Progress for Container:
Permutation Progress for Population:
Saving _problems/test-rptBinary-183.R
Bootstrap Progress:
Permutation Progress for Population :
Bootstrap Progress:
Permutation Progress for Container :
Permutation Progress for Population :
Bootstrap Progress:
Permutation Progress for Container :
Permutation Progress for Population :
Bootstrap Progress:
Permutation Progress for Container:
Bootstrap Progress:
Permutation Progress for Container:
Permutation Progress for Population:
Bootstrap Progress:
Permutation Progress for Container:
Bootstrap Progress:
Permutation Progress for Container:
Permutation Progress for Habitat:
Bootstrap Progress:
Permutation Progress for Population:
Bootstrap Progress:
Permutation Progress for Container:
Permutation Progress for Population:
Bootstrap Progress:
Permutation Progress for Population :
Bootstrap Progress:
Permutation Progress for Container:
Bootstrap Progress:
Permutation Progress for Population:
Bootstrap Progress:
Permutation Progress for Population:
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 221 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-rptBinary.R:182:1'): (code run outside of `test_that()`) ───────
<Rcpp::exception/C++Error/error/condition>
Error: Downdated VtV is not positive definite
Backtrace:
▆
1. └─rptR::rptBinary(...) at test-rptBinary.R:182:1
2. └─rptR:::LRT_nongaussian(formula, data, grname, mod, link, family)
3. ├─stats::logLik(mod_fun(formula = formula_red, data = data, family = family_fun(link = link)))
4. └─lme4 (local) mod_fun(formula = formula_red, data = data, family = family_fun(link = link))
5. └─lme4::optimizeGlmer(...)
6. └─lme4:::optwrap(...)
7. └─lme4:::deriv12(fn, opt$par, fx = opt$value)
8. └─lme4 (local) fun(xsa, ...)
9. └─lme4 (local) pwrssUpdate(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 221 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
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