Depends: R (>= 4.0.0)
Imports: Rcpp, vegan, sads (>= 0.4.1), grDevices, utils, graphics,
stats, methods
LinkingTo: Rcpp
Suggests: rmarkdown, spatstat.geom, spatstat.random, testthat (>=
3.0.0), mockery, knitr

Depends: R (>= 2.0.0), cclust, clue, cluster, class

Depends: R (>= 4.1.0)
Imports: data.table, plyranges (>= 1.14.0), dplyr, GenomicRanges,
RaggedExperiment, MultiAssayExperiment, SummarizedExperiment,
stringr, ggbio, wCorr, magrittr, rlang, AnnotationDbi,
BiocGenerics, GenomeInfoDb, GenomicFeatures, IRanges,
S4Vectors, assertthat, ensembldb, ggplot2, ggrepel,
matrixStats, methods, qvalue, scales, tidyr, ggridges, pbapply,
BSgenome, tidyselect, lifecycle
Suggests: ArchR, RMariaDB, motifmatchr, BiocManager,
TxDb.Hsapiens.UCSC.hg38.refGene,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,
BSgenome.Hsapiens.UCSC.hg19, withr, knitr, rmarkdown, chromVAR,
testthat (>= 3.0.0), uwot, irlba, glmmTMB, Matrix, waldo,
purrr, lmerTest, Biobase, lme4, zip, rtracklayer, cowplot,
mixtools, zoo

Imports: rlang, withr
Suggests: covr, fs, knitr, pkgload, rmarkdown, testthat, usethis

Suggests: testthat, pkgload, curl, jsonlite, withr

Imports: stats, utils, methods, ggplot2, scales

Imports: CCP, data.table, doParallel, foreach, genieclust, genio,
ggplot2, partition, parallel, tibble, tidyr, tools, utils

Depends: R (>= 2.14.0), mvtnorm, zoo, class

Depends: R (>= 3.2)
Imports: fBasics, stable, stabledist, stats, statip (>= 0.2.3)
Suggests: evd, knitr, mvtnorm, testthat, VGAM

Depends: R (>= 3.1.0), partykit (>= 1.2-6), grid
Imports: sandwich, stats, methods, ggplot2, Formula, gridExtra,
survival
Suggests: mvtnorm, TH.data, psychotools, strucchange, plyr, knitr,
ggbeeswarm, MASS

Depends: R (>= 3.6)
Imports: bayestestR (>= 0.13.1), datawizard (>= 0.9.1), effectsize (>=
0.8.6), insight (>= 0.19.8), parameters (>= 0.21.3),
performance (>= 0.10.8), graphics, stats, utils
Suggests: brms, correlation, emmeans (>= 1.8.3), gamm4, gganimate,
ggplot2, glmmTMB, knitr, lme4, logspline, marginaleffects,
mgcv, patchwork, poorman, report, rmarkdown, rstanarm, rtdists,
see (>= 0.7.4), testthat