Depends: R (>= 4.0.0)
Suggests: AnnotationDbi, assertthat, AUCell, circlize, cli, cluster,
clusterProfiler, colorspace, ComplexHeatmap, covr, decoupleR,
dplyr (>= 1.1.0), enrichplot, forcats, ggalluvial, ggbeeswarm,
ggdist, ggExtra, ggh4x, ggnewscale, ggplot2 (>= 3.4.0),
ggplotify, ggrastr, ggrepel, ggridges, ggsignif, graphics,
infercnv, knitr, labeling, magrittr, MASS, Matrix, methods,
Nebulosa, org.Hs.eg.db, patchwork, pheatmap, plyr, purrr, qpdf,
RColorBrewer, rjags, rlang, rmarkdown, scales, scattermore,
Seurat, SeuratObject, sf, stringr, svglite, testthat (>=
3.0.0), tibble, tidyr, UCell, viridis, withr

Imports: XML, xml2, rvest, data.table, parallel

Imports: httr, rvest, utils, magrittr, stringr

Imports: dplyr, fs, imager, magrittr, purrr, rlang, tibble,
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)

Suggests: covr, knitr, rmarkdown, spelling, testthat (>= 3.1.0), withr

Suggests: MASS, RSQLite (>= 0.4-15), oligoClasses (>= 1.1.9), DBI

Depends: R (>= 4.0)
Imports: splatter(>= 1.16.1), S4Vectors(>= 0.30.0),
SummarizedExperiment(>= 1.22.0), SingleCellExperiment(>=
1.14.1), edgeR(>= 3.34.0), methods, stats, mgcv, knitr,
BiocManager, BiocGenerics, Seurat, crayon, fitdistrplus,
checkmate (>= 2.0.0)
Suggests: rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.5.0)
Imports: RCy3, formatR, dplyr, stringr, utils, grDevices

Suggests: ape, knitr, rmarkdown, testthat (>= 0.9.0)

Imports: magrittr, dplyr, nortest, mclust, scDHA

Depends: R (>= 2.10)
Imports: Seurat, ggplot2, stringr, clustree, magrittr, Matrix, dplyr,
patchwork

Imports: ALL, ConsensusClusterPlus, scatterplot3d, ggplot2, Rtsne,
limma, edgeR, TPEA, Rmisc, lattice, plyr, ggthemes, reshape2,
PerformanceAnalytics, corrplot, Hmisc, igraph, survival

Depends: R (>= 3.60)
Imports: limma, S4Vectors, SingleCellExperiment, stats,
SummarizedExperiment, utils, uwot

Depends: R (>= 3.4.0)
Imports: cli, corrr, dplyr, ggplot2, ggrepel, glue, lifecycle,
magrittr, methods, purrr, rlang (>= 1.0.2), stats, stringr,
tibble, tidyr, tidyselect
Suggests: knitr, pkgload, rmarkdown, testthat (>= 3.0.0)