Contains summary data on gene expression in normal human tissues from the Human Protein Atlas for use with the 
  Tissue-Adjusted Pathway Analysis of cancer (TPAC) method.
  Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.

Tools for estimating and inferring two-way partial area under receiver operating characteristic curves (two-way pAUC), partial area under receiver operating characteristic curves (pAUC), and partial area under ordinal dominance curves (pODC). Methods includes Mann-Whitney statistic and Jackknife, etc.

Constraint-based causal discovery using the PC algorithm while
    accounting for a partial node ordering, for example a partial temporal ordering
    when the data were collected in different waves of a cohort study.
    Andrews RM, Foraita R, Didelez V, Witte J (2021) <arXiv:2108.13395>  
    provide a guide how to use tpc to analyse cohort data.

A threshold partial correlation approach to selecting 
             important variables in linear models of L. and others (2017) at
             <doi:10.5705/ss.202015.0473>, and in partial linear models
             of L. and others (2018) at <doi:10.1016/j.jmva.2018.06.005>. 
             This package also extends the PC-simple algorithm of
             B. and others (2010) at <doi:10.1093/biomet/asq008> to 
             partial linear models.

Tools to calculate trait probability density functions (TPD) at
    any scale (e.g. populations, species, communities). TPD functions are used to compute
    several indices of functional diversity, as well as its partition across scales.
    These indices constitute a unified framework that incorporates the underlying
    probabilistic nature of trait distributions into uni- or multidimensional
    functional trait-based studies. See Carmona et al. (2016) <doi:10.1016/j.tree.2016.02.003> for
    further information.

We described a novel Topology-based pathway enrichment analysis, which integrated the global position of the nodes and the topological property of the pathways in  Kyoto Encyclopedia of Genes and Genomes Database.
             We also provide some functions to obtain the latest information about pathways to finish pathway enrichment analysis using this method.