Includes bases for litholog generation: graphical functions
    based on R base graphics, interval management functions and svg importation 
    functions among others. Also include stereographic projection functions, 
    and other functions made to deal with large datasets while keeping options
    to get into the details of the data.
    When using for publication please cite 
    Sebastien Wouters, Anne-Christine Da Silva, Frederic Boulvain and 
    Xavier Devleeschouwer, 2021. The R Journal 13:2, 153-178.
    The palaeomagnetism functions are based on:
    Tauxe, L., 2010. Essentials of Paleomagnetism. University of California 
    Press. <https://earthref.org/MagIC/books/Tauxe/Essentials/>;
    Allmendinger, R. W., Cardozo, N. C., and Fisher, D., 2013, Structural 
    Geology Algorithms: Vectors & Tensors: Cambridge, England, Cambridge
    University Press, 289 pp.;
    Cardozo, N., and Allmendinger, R. W., 2013, Spherical projections
    with OSXStereonet: Computers & Geosciences, v. 51, no. 0, p. 193 - 205,
    <doi: 10.1016/j.cageo.2012.07.021>.

Provides functions to estimate a strategic selection estimator. A strategic selection estimator is an agent error model in which the two random components are not assumed to be orthogonal. In addition this package provides generic functions to print and plot objects of its class as well as the necessary functions to create tables for LaTeX. There is also a function to create dyadic data sets.

For a single, known pathogen phylogeny, provides functions for enumeration of the set of compatible epidemic transmission trees, and for uniform sampling from that set. Optional arguments allow for incomplete sampling with a known number of missing individuals, multiple sampling, and known infection time limits. Always assumed are a complete transmission bottleneck and no superinfection or reinfection. See Hall and Colijn (2019) <doi:10.1093/molbev/msz058> for methodology.

An Optimization Algorithm Applied to
    Stratification Problem.This function aims
    at constructing optimal strata with an optimization algorithm
    based on a global optimisation technique called vns.