Depends: R (>= 3.6)
Imports: clusterProfiler, dplyr, europepmc, fst, geneset, ggplot2,
ggraph, ggvenn, igraph, magrittr, openxlsx, stringr, stringi,
tidyr, rlang
Suggests: AnnotationDbi, BiocManager, cowplot, ComplexUpset,
data.table, fuzzyjoin, forcats, fgsea, futile.logger,
ggplotify, ggsci, ggupset, ggrepel, ggridges, ggnewscale,
GOplot, GOSemSim, labeling, msigdbr, pheatmap, pracma, tm,
treemap, RColorBrewer, rappdirs, RCurl, reshape2, rio, rrvgo,
scales, stats, testthat (>= 3.0.0), tibble, wordcloud, knitr,
rmarkdown, XML, xml2, httr

Depends: R (>= 4.3.0)
Imports: RcppML, NMF, stats, Seurat (>= 4.3.0), cluster, pheatmap,
viridis
Suggests: knitr, rmarkdown, fgsea, dplyr, msigdbr

Imports: CVST, graphics, kernlab, mgcv, stats, xgboost

Suggests: VarianceGamma, actuar, SkewHyperbolic, RUnit

Depends: R (>= 3.0)
Imports: Rcpp (>= 1.0.8), RcppParallel (>= 5.1.4), ggplot2
LinkingTo: Rcpp, RcppArmadillo, RcppParallel
Suggests: DataVisualizations, rgl, grid, mgcv, png, reshape2, fields,
ABCanalysis, plotly, deldir, methods, knitr (>= 1.12),
rmarkdown (>= 0.9)

Depends: R (>= 3.1)
Imports: methods, stats, utils, Matrix, Rcpp, spam, spam64, parallel,
optimParallel, fields
LinkingTo: Rcpp, RcppEigen, BH, Matrix
Suggests: knitr, R.rsp, testthat (>= 3.0.0), mvtnorm, ggplot2,
gridExtra, dplyr, microbenchmark

Depends: ggplot2, mlr3, mlr3learners
Imports: sandwich, lmtest, splitstackshape, stats, parallel, abind
Suggests: glmnet, ranger, rpart, e1071, xgboost, kknn, DiceKriging,
testthat (>= 3.0.0)

Suggests: covr, pkgload, testthat (>= 3.0.0), tibble, withr

Depends: R (>= 3.1)
Suggests: testthat (>= 2.1.0), knitr, rmarkdown

Suggests: clusterProfiler (>= 4.6.2), GO.db (>= 3.17.0), knitr,
rmarkdown, BiocManager (>= 1.30.21), UpSetR (>= 1.4.0),
AnnotationHub (>= 3.8.0), ensembldb (>= 2.24.0), org.Hs.eg.db
(>= 3.17.0)

Imports: dplyr, RCurl, fst, stringi, stringr

Depends: R (>= 3.1.3), SLOPE
Imports: ggplot2, bigmemory, grid, utils, stats
Suggests: shiny, knitr, rmarkdown, testthat

Imports: DT, gsl, gtools, hellno, htmltools, lubridate, MASS,
matrixStats, mvtnorm, Rcpp, shiny (>= 1.4.0), shinyjs, survival