Depends: R (>= 4.2.0), methods, gRbase (>= 2.0.0)
Imports: igraph, stats4, broom, magrittr, Rcpp (>= 0.11.1)
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, gRbase
Suggests: microbenchmark, knitr, testthat (>= 2.1.0)

Imports: ggplot2, graphics, grDevices, igraph, methods, sf, sp, raster,
Rcpp (>= 0.12.11.4), utils
LinkingTo: Rcpp
Suggests: covr, cowplot, ggthemes, knitr, parallel, rmarkdown,
spelling, testthat

Imports: graphics, igraph, methods, tools, utils

Depends: R (>= 3.5.0)
Imports: stats, Matrix, rlang, ggplot2, grDevices, patchwork, RCurl,
plyr, parallel, reshape2, MASS, scales, cowplot, minpack.lm,
lfc, labeling, methods, utils, numDeriv
Suggests: knitr, rmarkdown, circlize, Seurat, ComplexHeatmap, ggrepel,
DESeq2, S4Vectors, data.table, clusterProfiler, biomaRt,
msigdbr, fgsea, rclipboard, cubature, DT, shinyjs, shinyjqui,
RColorBrewer, gsl, htmltools, matrixStats, monocle, VGAM,
quantreg, graphics, shiny, ggrastr, viridisLite, deSolve

Depends: R (>= 2.14.0),
Imports: dplyr, ggplot2 (>= 0.9.2), magrittr, RColorBrewer, tibble,
tidyr

Imports: tibble, magrittr, vctrs, dplyr, tidyr, rlang, stringr

Suggests: shinytest, testthat, datasets, grid

Imports: adegenet, ggplot2, stringr, igraph, stats, spatstat.geom,
spatstat.linnet, Matrix, vegan, utils, methods, pegas, MASS,
tidyr, sp, sf, hierfstat, rappdirs, gdistance, raster, foreign,
ecodist, Rdpack

Imports: blockmodels, igraph, parallel, sClust

Imports: BBmisc (>= 1.6), checkmate (>= 1.1), reshape2 (>= 1.4.1),
vegan, ggplot2 (>= 1.0.0), lhs, deldir, grDevices
Suggests: testthat (>= 0.9.1), knitr, rmarkdown, gridExtra, magrittr

Imports: magrittr, httr, googlePolylines, jsonlite, tibble, dplyr
Suggests: sf, geojsonsf, ggplot2, testthat

Depends: R (>= 3.6.0)
Imports: igraph (>= 1.2.4.1), mvtnorm (>= 1.0.10), Rdpack, stats (>=
3.6.0), utils, corpcor, osqp, glmnet, glassoFast, edmcr, CVXR
Suggests: testthat (>= 2.1.0), knitr, rmarkdown, dplyr, ggplot2,
bookdown, maps

Imports: Rcpp (>= 0.11.3), Matrix, glasso, glmnet, mvtnorm, qgraph (>=
1.3.1), dplyr, methods, igraph, rlang