Imports: ggplot2, ggpubr, cowplot, tibble, dplyr, gghalves, utils, pwr,
sdamr, stats, Hmisc, zoo, patchwork

Depends: doParallel, foreach, parallel, methods, iterators, stats

Depends: R (>= 3.5.0)
Imports: survival, rms, foreach, ggplot2, flextable, plotROC, icenReg,
thregI

Imports: glmnet, JuliaCall, JuliaConnectoR, caret, dplyr

Depends: R (>= 3.4)
Imports: catdata, glmnet (>= 4.0), graphics, MASS, Matrix, methods,
mgcv, parallel, RColorBrewer, Rcpp (>= 0.12.12), stats
LinkingTo: Rcpp, RcppArmadillo (>= 0.8.300.1.0)
Suggests: bookdown, knitr, rmarkdown, roxygen2 (>= 6.0.0), testthat

Imports: MASS, fmsb, DescTools, shiny, shinydashboard, sortable

Imports: mnormt (>= 2.0.0), numDeriv, utils, quantreg

Depends: R (>= 2.0.0), utils, statnet.common, network

Imports: ggraph (>= 2.0.0), graphlayouts (>= 0.5.0), igraph, formatR,
miniUI, rstudioapi, ggplot2, shiny, colourpicker, DT

Suggests: testthat, covr, tibble, purrrlyr, knitr, rmarkdown, magrittr

Imports: graphics, grDevices, methods, stats, utils
Suggests: knitr, rmarkdown, terra, raster, sf, units, sp,

Depends: R (>= 4.2)
Imports: shiny, httr, utils, stats, rvest, dplyr, memoise
Suggests: knitr, rmarkdown, covr, testthat, shinydashboard, leaflet,
plotly, DT

Imports: graphics, igraph, parallel, Rcpp, Rdpack, stats

Imports: reticulate, yaml, DBI, RPostgres

Imports: adegenet, doParallel, dplyr, forcats, foreach, ggplot2,
graphics, magrittr, parallel, readr, tidyr, utils, withr, yaml

Depends: R (>= 3.5)
Imports: data.table, httr, jsonlite, xml2, openxlsx, progress,
doParallel, foreach, ggplot2, kableExtra, methods, rmarkdown

Depends: R (>= 4.0.0)
Imports: haplo.stats, mvtnorm, parallel, survival, tidyr, plyr,
ggplot2, poisbinom
Suggests: testthat, knitr, rmarkdown, biomaRt, VariantAnnotation,
GenomicRanges, IRanges, S4Vectors, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle

Imports: vcfR, ggplot2, Rtsne, cluster, adegenet, gridExtra, ggridges,
stats, graphics, utils

Suggests: knitr, testthat, parallel, doParallel

Depends: R (>= 2.15), GWASTools (>= 1.10.1)
Imports: gdsfmt, ggplot2, gtable, magrittr, stats, utils
Suggests: biomaRt, cowplot, data.table, dplyr, ggrepel, grid,
grDevices, knitr, methods, plyr, SNPRelate, testthat