Depends: R (>= 2.15.0), edgeR, limma, MASS, parallel, stats, methods
Suggests: knitr, rmarkdown

Imports: igraph, scales, networkD3, testthat, fields, methods, stringr

LinkingTo: Rcpp, RcppArmadillo, RcppDist, BH

Imports: stats, stats4, graphics, lattice, grDevices, Rcpp, tcltk,
qrng, mvtnorm, gtools, parallel, label.switching, methods,
coda, future.apply, loo (>= 2.4.1), RColorBrewer,
bridgesampling, scales, numDeriv

Imports: rlang, glue, httr, curl, jsonlite, magrittr, dplyr, purrr,
tibble, tidyr, lubridate, janitor, stringr, cli, withr

Depends: R (>= 4.0.0)
Imports: rjags (>= 4.0.0), R2jags (>= 0.04-03), stats, ggplot2,
ggExtra, MASS, grid, gridExtra

Depends: R (>= 3.5.0), coda, colorspace, distributions3 (>= 0.2.1),
mgcv
Imports: Formula, MBA, mvtnorm, sp, Matrix, survival, methods, parallel
Suggests: bit, ff, fields, gamlss, gamlss.dist, interp, rjags, BayesX,
mapdata, maps, sf, nnet, spatstat, spdep, zoo, keras, splines2,
sdPrior, statmod, glogis, glmnet, scoringRules, knitr,
rmarkdown, MASS, tensorflow

Suggests: knitr, crosstalk, plotly, rmarkdown, testthat (>= 3.0.0),
covr

Imports: Rcpp (>= 0.11.0), gplots, methods

Imports: coda, graphics, parallel, stats, abind

Imports: cli, utils
Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0)

Suggests: ggplot2, knitr, MASS, rmarkdown, tinytest

Depends: R (>= 3.3.0)
Imports: bayesplot (>= 1.1.0), graphics, rust (>= 1.2.2), stats
Suggests: ggplot2 (>= 2.2.1), knitr, MASS, rmarkdown, testthat

Suggests: dplyr, ggplot2, knitr, rmarkdown, scales, viridis

Suggests: knitr, rmarkdown, dplyr, datasets

Imports: dplyr (>= 1.0.6), ggplot2 (>= 3.3.3), gridExtra (>= 2.3),
methods, parallel, randomForest (>= 4.6), rfPermute (>= 2.5.1),
rlang, stats, swfscMisc (>= 1.5), tibble (>= 3.1.2), tidyr (>=
1.1.1)

Depends: R (>= 3.1.0), glmnet, lme4, MASS, sva, affyPLM
Imports: FNN, fuzzyRankTests, methods, mnormt, affy, Biobase
Suggests: ArrayExpress

Depends: qrcode, R (>= 4.0.0)
Imports: DT (>= 0.3), grDevices, grid, miniUI (>= 0.1.1), rstudioapi,
shiny (>= 0.13)
Suggests: covr, knitr, rmarkdown, shinytest, testthat (>= 2.1.0)