Imports: MASS, mvtnorm, subplex, deSolve (>= 1.7), digest, Rcpp (>=
0.11.0), coda, ncbit, colorspace, methods

Imports: MASS, glmnet, stats, rvest, dplyr, pheatmap, grDevices,
graphics

Depends: R (>= 3.5.0)
Imports: MASS, splines, pcaPP, Hmisc, survival, quantreg, reshape2,
ggplot2, stats, graphics

Suggests: covr, testthat, knitr, rmarkdown, readr

Imports: MASS, methods, msm, plyr, graphics, stats, utils, data.table
Suggests: muhaz

Imports: igraph (>= 1.0), meta (>= 2.1), plyr (>= 1.8), graphics,
grDevices, stats, utils, grid, rjags (>= 4-0), truncnorm,
Rglpk, forcats (>= 0.5.0)

Depends: R (>= 2.0.0), graphics, stats, clinfun

Depends: R (>= 3.5.0)
Imports: Rcpp (>= 0.12.16), Matrix, methods, utils, raster, gdistance,
stringr, tools, grDevices
LinkingTo: Rcpp, BH
Suggests: knitr, markdown, testthat (>= 2.1.0), rmarkdown, formatR

Depends: dplyr, utils
Imports: ggplot2, minpack.lm, plyr, pracma, tidyr, stats, naturalsort,
rlang

Depends: magrittr
Imports: base64enc, httr, jsonlite, tools, R6, listenv, magick,
ggplotify

Imports: methods, stats, MASS, oompaBase (>= 3.0.1), ClassDiscovery

Depends: R (>= 3.4)
Imports: methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph,
igraph, network, phangorn, stringdist, visNetwork, reshape2,
S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger,
future, future.apply, tools, ShortRead, Biostrings
Suggests: BiocManager, testthat, knitr, rmarkdown

Suggests: genderdata (>= 0.6.0), ggplot2 (>= 3.3.0), knitr (>= 1.28),
testthat (>= 2.3.2), rmarkdown (>= 2.1), covr

Imports: dplyr (>= 0.5.0), jsonlite, httr, magrittr, purrr, tibble

Suggests: dplyr, knitr, rmarkdown, testthat

Depends: R (>= 2.14.0), methods, utils, grDevices, MASS, GENEAread,
changepoint, signal, rpart
Suggests: waveslim, knitr, rmarkdown

Depends: R (>= 2.7.0), MASS, longitudinal (>= 1.1.3), fdrtool (>=
1.2.5)

Imports: BiocManager, xml2, Biobase, annotate, GEOquery, markdown,
R.utils

Depends: ggplot2, R (>= 4.0.0)
Imports: ape, Biostrings, ggpubr, genetics, GenomicRanges, lolliplot,
maps, methods, IRanges, pegas, reshape2, rlang, rtracklayer,
shiny, shinyjs, stats, stringdist, stringr, tibble, sf, tidyr,
utils, vcfR
Suggests: mapdata, knitr, rmarkdown, testthat (>= 3.0.0)