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Provides tools for antimicrobial resistance surveillance, epidemiological analysis, temporal trend detection, early warning detection, spatial cluster identification, and risk factor analysis. The package supports analysis of antimicrobial resistance patterns, resistance to multiple antimicrobial classes, temporal surveillance, and spatial epidemiology for applications in veterinary, medical, and One Health research. Antimicrobial resistance surveillance approaches are informed by guidelines from WHO (2023) <https://www.who.int/publications/i/item/9789240076600> and WOAH (2024) <https://www.woah.org/fileadmin/Home/eng/Health_standards/tahc/2024/en_chapitre_antibio_harmonisation.htm>. Statistical methods include cumulative sum (CUSUM) monitoring (Page, 1954) <doi:10.1093/biomet/41.1-2.100>, exponentially weighted moving average (EWMA) monitoring (Roberts, 1959) <doi:10.1080/00401706.1959.10489860>, Local Moran's I spatial analysis (Anselin, 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x>, and multidrug- and extensively drug-resistant classification (Magiorakos et al., 2012) <doi:10.1111/j.1469-0691.2011.03570.x>.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | dplyr, ggplot2, rlang, sf, spdep, stats |
| Suggests: | covr, testthat (≥ 3.0.0) |
| Published: | 2026-09-12 |
| DOI: | 10.32614/CRAN.package.AMRsurveilR (may not be active yet) |
| Author: | Vinodhkumar Obli Rajendran [aut, cre], Keerthi Aaradhana [aut] |
| Maintainer: | Vinodhkumar Obli Rajendran <vinodhkumar.rajendran at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Language: | en-US |
| CRAN checks: | AMRsurveilR results |
| Reference manual: | AMRsurveilR.html , AMRsurveilR.pdf |
| Package source: | AMRsurveilR_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): AMRsurveilR_0.1.0.tgz, r-release (x86_64): AMRsurveilR_0.1.0.tgz, r-oldrel (x86_64): AMRsurveilR_0.1.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.