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AmyloGram predicts amyloid proteins using n-gram encoding and random forests. It can be also accessed as a web-based service http://www.smorfland.uni.wroc.pl/shiny/AmyloGram/.
AmyloGram can be used installed from CRAN as the R package:
install.packages("AmyloGram")You can install the latest development version of the code using the
devtools R package.
# Install devtools, if you haven't already.
install.packages("devtools")
devtools::install_github("michbur/AmyloGram")After installation GUI can be accessed locally:
library(AmyloGram)
AmyloGram_gui()Predictions might be also made in the batch mode:
data(AmyloGram_model)
data(pep424)
predict(AmyloGram_model, pep424[1L:20])These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.