The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

BASiNET: Classification of RNA Sequences using Complex Network Theory

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) <doi:10.1093/nar/gky462>.

Version: 0.0.5
Depends: R (≥ 3.4.0)
Imports: igraph, Biostrings, RWeka, randomForest, rmcfs, grDevices, graphics, stats, rJava
Suggests: knitr, rmarkdown
Published: 2022-08-19
DOI: 10.32614/CRAN.package.BASiNET
Author: Eric Augusto Ito ORCID iD [aut], Fabricio Martins Lopes ORCID iD [aut, cre]
Maintainer: Fabricio Martins Lopes <fabricio at utfpr.edu.br>
License: GPL-3
NeedsCompilation: no
In views: Omics
CRAN checks: BASiNET results

Documentation:

Reference manual: BASiNET.pdf
Vignettes: Classification of mRNA and lncRNA sequences

Downloads:

Package source: BASiNET_0.0.5.tar.gz
Windows binaries: r-devel: BASiNET_0.0.5.zip, r-release: BASiNET_0.0.5.zip, r-oldrel: BASiNET_0.0.5.zip
macOS binaries: r-release (arm64): BASiNET_0.0.5.tgz, r-oldrel (arm64): BASiNET_0.0.5.tgz, r-release (x86_64): BASiNET_0.0.5.tgz, r-oldrel (x86_64): BASiNET_0.0.5.tgz
Old sources: BASiNET archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=BASiNET to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.