The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
A systematic biology tool was developed to identify cell infiltration via Individualized Cell-Cell interaction network. 'CITMIC' first constructed a weighted cell interaction network through integrating Cell-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.
| Version: | 0.1.0 |
| Depends: | R (≥ 2.10) |
| Imports: | fastmatch, igraph, parallel, stats |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-06-14 |
| DOI: | 10.32614/CRAN.package.CITMIC |
| Author: | Junwei Han [aut, cre, cph], Xilong Zhao [aut] |
| Maintainer: | Junwei Han <hanjunwei1981 at 163.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | CITMIC results |
| Reference manual: | CITMIC.pdf |
| Vignettes: |
CITMIC User Guide |
| Package source: | CITMIC_0.1.0.tar.gz |
| Windows binaries: | r-devel: CITMIC_0.1.0.zip, r-release: CITMIC_0.1.0.zip, r-oldrel: CITMIC_0.1.0.zip |
| macOS binaries: | r-release (arm64): CITMIC_0.1.0.tgz, r-oldrel (arm64): CITMIC_0.1.0.tgz, r-release (x86_64): CITMIC_0.1.0.tgz, r-oldrel (x86_64): CITMIC_0.1.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=CITMIC to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.