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Cascade: Selection, Reverse-Engineering and Prediction in Cascade Networks

A modeling tool allowing gene selection, reverse engineering, and prediction in cascade networks. Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014) <doi:10.1093/bioinformatics/btt705>.

Version: 2.1
Depends: R (≥ 3.5.0)
Imports: abind, animation, cluster, grid, igraph, lars, lattice, limma, magic, methods, nnls, splines, stats4, survival, tnet, VGAM
Suggests: R.rsp, CascadeData, knitr
Published: 2022-11-28
DOI: 10.32614/CRAN.package.Cascade
Author: Frederic Bertrand ORCID iD [cre, aut], Myriam Maumy-Bertrand ORCID iD [aut], Laurent Vallat [ctb], Nicolas Jung [ctb]
Maintainer: Frederic Bertrand <frederic.bertrand at utt.fr>
BugReports: https://github.com/fbertran/Cascade/issues/
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://fbertran.github.io/Cascade/, https://github.com/fbertran/Cascade/
NeedsCompilation: no
Classification/MSC: 62J05, 62J07, 62J99, 92C42
Citation: Cascade citation info
Materials: README NEWS
In views: Omics
CRAN checks: Cascade results

Documentation:

Reference manual: Cascade.pdf
Vignettes: Cascade: Manual
Cascade: Introduction to Cascade
Cascade: E-MTAB-1475_re-analysis

Downloads:

Package source: Cascade_2.1.tar.gz
Windows binaries: r-devel: Cascade_2.1.zip, r-release: Cascade_2.1.zip, r-oldrel: Cascade_2.1.zip
macOS binaries: r-release (arm64): Cascade_2.1.tgz, r-oldrel (arm64): Cascade_2.1.tgz, r-release (x86_64): Cascade_2.1.tgz, r-oldrel (x86_64): Cascade_2.1.tgz
Old sources: Cascade archive

Reverse dependencies:

Reverse imports: SelectBoost

Linking:

Please use the canonical form https://CRAN.R-project.org/package=Cascade to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.