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DBTC: Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis

First using 'dada2' R tools to analyse metabarcode data, the 'DBTC' package then uses the BLAST algorithm to search unknown sequences against local databases, and then takes reduced matched results and provides best taxonomic assignments.

Version: 0.1.0
Imports: dada2, ggplot2, parallel, pbapply, plyr, ShortRead, stats, taxonomizr, utils
Published: 2024-04-27
DOI: 10.32614/CRAN.package.DBTC
Author: Robert G Young ORCID iD [aut, cre, cph]
Maintainer: Robert G Young <rgyoung6 at gmail.com>
License: GPL-2 | GPL-3
URL: <https://github.com/rgyoung6/DBTC>
NeedsCompilation: no
Language: en-GB
Materials: README
CRAN checks: DBTC results

Documentation:

Reference manual: DBTC.pdf

Downloads:

Package source: DBTC_0.1.0.tar.gz
Windows binaries: r-devel: DBTC_0.1.0.zip, r-release: DBTC_0.1.0.zip, r-oldrel: DBTC_0.1.0.zip
macOS binaries: r-release (arm64): DBTC_0.1.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): DBTC_0.1.0.tgz, r-oldrel (x86_64): not available

Reverse dependencies:

Reverse imports: DBTCShiny

Linking:

Please use the canonical form https://CRAN.R-project.org/package=DBTC to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.