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FuncDiv

FuncDiv is an R package for computing contributional diversity of joint taxa-function data.

It is described in this paper: Gavin M. Douglas, Sunu Kim, Morgan G. I. Langille, B. Jesse Shapiro. 2023. Efficient computation of contributional diversity metrics from microbiome data with FuncDiv. Bioinformatics 39 (1): btac809. DOI: 10.1093/bioinformatics/btac809

All feedback is appreciated! Please open an issue on this repository if you would like to ask a question or make a comment.

Please see our wiki site for the documentation.

Licensing note: This repository contains modified code (specifically in R/beta_workflow.R and src/rbiom_par_unifrac.cpp) from version 1.0.3 of the rbiom R package (link to original source code). The original code and FuncDiv are distributed under GNU Affero General Public Licenses.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.