The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

GARCOM: Gene and Region Counting of Mutations ("GARCOM")

Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.

Version: 1.2.2
Depends: R (≥ 3.5.0)
Imports: data.table (≥ 1.12.8), stats, vcfR (≥ 1.12.0)
Suggests: testthat
Published: 2022-12-23
DOI: 10.32614/CRAN.package.GARCOM
Author: Sanjeev Sariya [aut, cre, cph], Giuseppe Tosto [aut, cph]
Maintainer: Sanjeev Sariya <sanjeevsariya at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: GARCOM citation info
Materials: README NEWS
CRAN checks: GARCOM results

Documentation:

Reference manual: GARCOM.pdf

Downloads:

Package source: GARCOM_1.2.2.tar.gz
Windows binaries: r-devel: GARCOM_1.2.2.zip, r-release: GARCOM_1.2.2.zip, r-oldrel: GARCOM_1.2.2.zip
macOS binaries: r-release (arm64): GARCOM_1.2.2.tgz, r-oldrel (arm64): GARCOM_1.2.2.tgz, r-release (x86_64): GARCOM_1.2.2.tgz, r-oldrel (x86_64): GARCOM_1.2.2.tgz
Old sources: GARCOM archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=GARCOM to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.