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GalaxyR 0.1.0 (Initial CRAN release)

• Initial release of the Galaxy R client, providing a high-level and S4-based interface to Galaxy’s REST API. S4 Galaxy session object to carry state (history, datasets, invocation IDs, outputs, status) through pipe-based workflows.
• Supports configuring Galaxy connection parameters via environment variables (GALAXY_API_KEY, GALAXY_URL) and helper galaxy_initialize() constructor.
• History management: list histories, create new histories, inspect history sizes (robust to different Galaxy size fields), and include deleted items optionally.
• Dataset operations: upload via HTTPS (and FTP helper), wait for completion, retrieve dataset metadata, download results with safe/unique file naming, and delete single or multiple datasets with optional purge.
• Workflow operations: list workflows (including published), fetch workflow metadata and inputs, start workflow invocations, and poll workflow execution with job-level state tracking and result collection.
• Tooling: list tools (with optional panel filtering), fetch detailed tool definitions, validate tool inputs, and run single tools with automatic dataset input wiring.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.