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HMP: Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP

Using Dirichlet-Multinomial distribution to provide several functions for formal hypothesis testing, power and sample size calculations for human microbiome experiments.

Version: 2.0.1
Depends: R (≥ 3.1.0), dirmult
Imports: ggplot2, stats, foreach, doParallel, MASS, vegan, gplots, rpart, rpart.plot, parallel, graphics, lattice
Published: 2019-08-31
DOI: 10.32614/CRAN.package.HMP
Author: Patricio S. La Rosa, Elena Deych, Sharina Carter, Berkley Shands, Dake Yang, William D. Shannon
Maintainer: Berkley Shands <rpackages at biorankings.com>
License: Apache License (== 2.0)
NeedsCompilation: no
Materials: NEWS
CRAN checks: HMP results

Documentation:

Reference manual: HMP.pdf
Vignettes: Figures from Reference Paper

Downloads:

Package source: HMP_2.0.1.tar.gz
Windows binaries: r-devel: HMP_2.0.1.zip, r-release: HMP_2.0.1.zip, r-oldrel: HMP_2.0.1.zip
macOS binaries: r-release (arm64): HMP_2.0.1.tgz, r-oldrel (arm64): HMP_2.0.1.tgz, r-release (x86_64): HMP_2.0.1.tgz, r-oldrel (x86_64): HMP_2.0.1.tgz
Old sources: HMP archive

Reverse dependencies:

Reverse imports: HMPTrees

Linking:

Please use the canonical form https://CRAN.R-project.org/package=HMP to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.