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InteRD Integrated and robust cell-type deconvolution

R-CMD-check

InteRD has three primary advantages. First, it is able to effectively integrate deconvolution results from multiple scRNA-seq datasets. Second, InteRD calibrates estimates from reference-based deconvolution by taking into account extra biological information as priors. Third, InteRD is equipped with a data-driven mechanism of self-control designed to be robust to the introduction of inaccurate information in the deconvolution system.

Installation

You can install the released version of InteRD with:

#install devtools if necessary
install.packages("devtools")

#install the InteRD package
devtools::install_github("chencxxy28/InteRD")

#load
library(InteRD)

If Biobase package is not available, please install it first before installation of InteRD

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Biobase")

Vignettes

Please visit Tutorial.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.