The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

LocaTT: Geographically-Conscious Taxonomic Assignment for Metabarcoding

A bioinformatics pipeline for performing taxonomic assignment of DNA metabarcoding sequence data while considering geographic location. A detailed tutorial is available at <https://urodelan.github.io/Local_Taxa_Tool_Tutorial/>. A manuscript describing these methods is in preparation.

Version: 1.1.1
Imports: utils, stats, taxize
Published: 2023-10-30
Author: Kenen Goodwin ORCID iD [aut, cre], Taal Levi [aut]
Maintainer: Kenen Goodwin <urodelan at gmail.com>
BugReports: https://github.com/Urodelan/LocaTT/issues
License: GPL (≥ 3)
URL: https://github.com/Urodelan/LocaTT
NeedsCompilation: no
Citation: LocaTT citation info
Materials: README
CRAN checks: LocaTT results

Documentation:

Reference manual: LocaTT.pdf

Downloads:

Package source: LocaTT_1.1.1.tar.gz
Windows binaries: r-devel: LocaTT_1.1.1.zip, r-release: LocaTT_1.1.1.zip, r-oldrel: LocaTT_1.1.1.zip
macOS binaries: r-release (arm64): LocaTT_1.1.1.tgz, r-oldrel (arm64): LocaTT_1.1.1.tgz, r-release (x86_64): LocaTT_1.1.1.tgz, r-oldrel (x86_64): LocaTT_1.1.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=LocaTT to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.