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MetaNet: Network Analysis for Omics Data

Comprehensive network analysis package. Calculate correlation network fastly, accelerate lots of analysis by parallel computing. Support for multi-omics data, search sub-nets fluently. Handle bigger data, more than 10,000 nodes in each omics. Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize. Provide comprehensive topology indexes calculation, including ecological network stability.

Version: 0.1.2
Depends: R (≥ 4.1.0), igraph (≥ 1.3.5)
Imports: graphics, dplyr, ggplot2 (≥ 3.2.0), ggnewscale, ggrepel, RColorBrewer, grDevices, magrittr, reshape2, stats, tibble, utils, pcutils (≥ 0.2.5), rlang
Suggests: pheatmap, vegan, stringr, foreach, doSNOW, snow, knitr, rmarkdown, prettydoc, Hmisc, gifski, ggraph, networkD3, ggpmisc, ggtree, treeio, circlize, ggpubr
Published: 2024-03-25
DOI: 10.32614/CRAN.package.MetaNet
Author: Chen Peng ORCID iD [aut, cre]
Maintainer: Chen Peng <pengchen2001 at zju.edu.cn>
BugReports: https://github.com/Asa12138/MetaNet/issues
License: GPL-3
URL: https://github.com/Asa12138/MetaNet
NeedsCompilation: no
Materials: README NEWS
CRAN checks: MetaNet results

Documentation:

Reference manual: MetaNet.pdf
Vignettes: MetaNet

Downloads:

Package source: MetaNet_0.1.2.tar.gz
Windows binaries: r-devel: MetaNet_0.1.2.zip, r-release: MetaNet_0.1.2.zip, r-oldrel: MetaNet_0.1.2.zip
macOS binaries: r-release (arm64): MetaNet_0.1.2.tgz, r-oldrel (arm64): MetaNet_0.1.2.tgz, r-release (x86_64): MetaNet_0.1.2.tgz, r-oldrel (x86_64): MetaNet_0.1.2.tgz
Old sources: MetaNet archive

Reverse dependencies:

Reverse suggests: pctax, ReporterScore

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MetaNet to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.