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NGCHM: Next Generation Clustered Heat Maps

Next-Generation Clustered Heat Maps (NG-CHMs) allow for dynamic exploration of heat map data in a web browser. 'NGCHM' allows users to create both stand-alone HTML files containing a Next-Generation Clustered Heat Map, and .ngchm files to view in the NG-CHM viewer. See Ryan MC, Stucky M, et al (2020) <doi:10.12688/f1000research.20590.2> for more details.

Version: 1.0.3
Depends: R (≥ 3.4.0)
Imports: digest, grDevices, htmltools, httr, jsonlite, logger (≥ 0.2.0), methods, stats, tsvio, utils
Suggests: knitr, rmarkdown, Rtsne, testthat, umap, uwot
Enhances: NGCHMDemoData, NGCHMSupportFiles
Published: 2024-05-08
DOI: 10.32614/CRAN.package.NGCHM
Author: Bradley M Broom ORCID iD [aut], Mary A Rohrdanz [ctb, cre], Chris Wakefield [ctb], James Melott [ctb], MD Anderson Cancer Center [cph]
Maintainer: Mary A Rohrdanz <marohrdanz at mdanderson.org>
License: GPL-3
URL: https://md-anderson-bioinformatics.github.io/NGCHM-R/, https://github.com/MD-Anderson-Bioinformatics/NGCHM-R
NeedsCompilation: no
SystemRequirements: Java (>= 11) Git
Additional_repositories: https://md-anderson-bioinformatics.r-universe.dev
Materials: README
CRAN checks: NGCHM results

Documentation:

Reference manual: NGCHM.pdf

Downloads:

Package source: NGCHM_1.0.3.tar.gz
Windows binaries: r-devel: NGCHM_1.0.3.zip, r-release: NGCHM_1.0.3.zip, r-oldrel: NGCHM_1.0.3.zip
macOS binaries: r-release (arm64): NGCHM_1.0.3.tgz, r-oldrel (arm64): NGCHM_1.0.3.tgz, r-release (x86_64): NGCHM_1.0.3.tgz, r-oldrel (x86_64): NGCHM_1.0.3.tgz
Old sources: NGCHM archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=NGCHM to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.