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Rtapas: Random Tanglegram Partitions
Applies a given global-fit method to random partial tanglegrams of a fixed size
to identify the associations, terminals, and nodes that maximize phylogenetic
(in)congruence. It also includes functions to compute more easily the confidence
intervals of classification metrics and plot results, reducing computational time.
See Llaberia-Robledillo et al., (2023) <doi:10.1093/sysbio/syad016>.
| Version: |
1.2 |
| Depends: |
phytools, parallel, R (≥ 3.5.0) |
| Imports: |
ape, distory, paco, parallelly, stats, stringr, vegan |
| Suggests: |
testthat (≥ 3.2.1.1) |
| Published: |
2024-06-13 |
| DOI: |
10.32614/CRAN.package.Rtapas |
| Author: |
Mar Llaberia-Robledillo
 [aut, cre,
cph],
Juan A. Balbuena
[aut, cph],
José Ignacio Lucas-Lledó
[aut, cph],
Oscar Alejandro Pérez-Escobar
[aut, cph] |
| Maintainer: |
Mar Llaberia-Robledillo <mar.llaberia at uv.es> |
| License: |
MIT + file LICENSE |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
Rtapas results |
Documentation:
Downloads:
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.