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TDCor: Gene Network Inference from Time-Series Transcriptomic Data

The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.

Version: 0.1-2
Depends: R (≥ 3.1.2), deSolve
Imports: parallel
Published: 2015-10-26
DOI: 10.32614/CRAN.package.TDCor
Author: Julien Lavenus
Maintainer: Mikael Lucas <mikael.lucas at ird.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: TDCor results

Documentation:

Reference manual: TDCor.pdf

Downloads:

Package source: TDCor_0.1-2.tar.gz
Windows binaries: r-devel: TDCor_0.1-2.zip, r-release: TDCor_0.1-2.zip, r-oldrel: TDCor_0.1-2.zip
macOS binaries: r-release (arm64): TDCor_0.1-2.tgz, r-oldrel (arm64): TDCor_0.1-2.tgz, r-release (x86_64): TDCor_0.1-2.tgz, r-oldrel (x86_64): TDCor_0.1-2.tgz
Old sources: TDCor archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.