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UCSCXenaTools: Download and Explore Datasets from UCSC Xena Data Hubs

Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.

Version: 1.4.8
Depends: R (≥ 3.5)
Imports: digest, dplyr, httr, jsonlite, magrittr, methods, readr, rlang, utils
Suggests: covr, DT, knitr, prettydoc, rmarkdown, shiny, shinydashboard, testthat (≥ 2.1.0)
Published: 2022-06-20
DOI: 10.32614/CRAN.package.UCSCXenaTools
Author: Shixiang Wang ORCID iD [aut, cre], Xue-Song Liu ORCID iD [aut], Martin Morgan [ctb], Christine Stawitz [rev] (Christine reviewed the package for ropensci, see <https://github.com/ropensci/software-review/issues/315>), Carl Ganz [rev] (Carl reviewed the package for ropensci, see <https://github.com/ropensci/software-review/issues/315>)
Maintainer: Shixiang Wang <w_shixiang at 163.com>
BugReports: https://github.com/ropensci/UCSCXenaTools/issues
License: GPL-3
URL: https://docs.ropensci.org/UCSCXenaTools/, https://github.com/ropensci/UCSCXenaTools
NeedsCompilation: no
Citation: UCSCXenaTools citation info
Materials: README NEWS
CRAN checks: UCSCXenaTools results

Documentation:

Reference manual: UCSCXenaTools.pdf
Vignettes: Basic usage

Downloads:

Package source: UCSCXenaTools_1.4.8.tar.gz
Windows binaries: r-devel: UCSCXenaTools_1.4.8.zip, r-release: UCSCXenaTools_1.4.8.zip, r-oldrel: UCSCXenaTools_1.4.8.zip
macOS binaries: r-release (arm64): UCSCXenaTools_1.4.8.tgz, r-oldrel (arm64): UCSCXenaTools_1.4.8.tgz, r-release (x86_64): UCSCXenaTools_1.4.8.tgz, r-oldrel (x86_64): UCSCXenaTools_1.4.8.tgz
Old sources: UCSCXenaTools archive

Reverse dependencies:

Reverse imports: UCSCXenaShiny
Reverse suggests: sigminer

Linking:

Please use the canonical form https://CRAN.R-project.org/package=UCSCXenaTools to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.