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Tools for the identification of unique multilocus genotypes when both genotyping error and missing data may be present. Includes a data pre-screening utility to analyze pairwise locus overlap and protect against underlying mathematical sorting constraints. Targeted for use with large datasets and databases containing multiple samples of each individual (a common situation in conservation genetics, particularly in non-invasive wildlife sampling applications). Functions explicitly incorporate missing data and can tolerate allele mismatches created by genotyping error. If you use this package, please cite the original publication in Molecular Ecology Resources (Galpern et al., 2012), the details for which can be generated using citation('allelematch'). The complete user manual and analytical tutorials are included locally as an R vignette and can be accessed within an active R session using vignette('allelematch').
| Version: | 2.6.0 |
| Depends: | R (≥ 3.5.0), dynamicTreeCut |
| Suggests: | knitr, rmarkdown |
| Published: | 2026-07-05 |
| DOI: | 10.32614/CRAN.package.allelematch |
| Author: | Paul Galpern [aut], Micheline Manseau [aut], Pete Hettinga [aut], Karen Smith [aut], Paul Wilson [aut], Todd Cross [cre] |
| Maintainer: | Todd Cross <todd.cross at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | <doi:10.1111%2Fj.1755-0998.2012.03137.x> |
| NeedsCompilation: | no |
| Citation: | allelematch citation info |
| CRAN checks: | allelematch results |
| Reference manual: | allelematch.html , allelematch.pdf |
| Vignettes: |
The ALLELEMATCH Package for R: Supplementary Documentation with Tutorials (source, R code) |
| Package source: | allelematch_2.6.0.tar.gz |
| Windows binaries: | r-devel: allelematch_2.6.0.zip, r-release: allelematch_2.6.0.zip, r-oldrel: allelematch_2.6.0.zip |
| macOS binaries: | r-release (arm64): allelematch_2.6.0.tgz, r-oldrel (arm64): allelematch_2.6.0.tgz, r-release (x86_64): allelematch_2.6.0.tgz, r-oldrel (x86_64): allelematch_2.6.0.tgz |
| Old sources: | allelematch archive |
| Reverse depends: | amregtest |
Please use the canonical form https://CRAN.R-project.org/package=allelematch to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.